PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn298271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 436aa    MW: 46783.7 Da    PI: 6.8776
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn298271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.4e-12125181155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Achn298271 125 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 181
                 57*******************5444.2455536655.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.00E-19125190No hitNo description
PfamPF008472.9E-9125181IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-15125190IPR016177DNA-binding domain
PROSITE profilePS5103217.477126189IPR001471AP2/ERF domain
SMARTSM003809.6E-20126195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-12126189IPR001471AP2/ERF domain
PRINTSPR003671.6E-6127138IPR001471AP2/ERF domain
SMARTSM003800.003196236IPR001471AP2/ERF domain
PROSITE profilePS510328.953202230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-7202231IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-5204232IPR016177DNA-binding domain
PRINTSPR003671.6E-6212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAVRLWKRRR KLATLEVVPG GGVDRVSDDH QDPSSDAITD LSIFTGGPKL EDLLGGGGST  60
DVCQFTGETP ATNVSEAEIY DSELKTIAAS FLRALSTEQA DGQKQLAPPE PAAKKPIDTF  120
SQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEEKAAR AYDLAALKYW  180
GPTTTTNFPV YIMHACHASF LTLRTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA  240
SCNLPVGGIT GKSKTSTDSA LASDKNSKDG GQSDDRDLSS AAASVTFAPQ PPSSSLSFGL  300
PIKQDTTDNY WSILGYHNNP SLNSTAKNPA TASSATPLFQ ASTSGGGTTS FQGTTPYSMD  360
LSTTNNINNN GLLNGWVYLQ QQSIGTSDGI PFATPIALSS NGNSYKGGSF GNWVHSFQSA  420
KPNLSVFQTP IFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021655432.11e-151AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-100AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2R6P4C10.0A0A2R6P4C1_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGcassava4.1_004734m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-91AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]