PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn298101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 26060.8 Da PI: 4.4678 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g W++eEde+l + ++++G g+W+t+++ Achn298101 14 KGLWSPEEDEKLFNHITRFGIGCWSTVPKL 43 678************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.44E-7 | 6 | 43 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 7 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.725 | 9 | 42 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.18E-4 | 17 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MGRQSGCVKP KLRKGLWSPE EDEKLFNHIT RFGIGCWSTV PKLAAAMSST IFYEGGLNLT 60 EGSREQFENK PVFDPLLVYE FQGNADPIGY NSSFSAQYLR PYSQSYQEVN SHLGFNSMPN 120 LTSFDHQNVA ETDFSGNSTS QMSSLLFSEV KESSSNSSIM KNMMENAEFS WDTDKFESVF 180 QCQNGIKYEE MKPSPWPEGQ LQNHNSEYFS SYPLTSLSED LARAPMDVFQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028060341.1 | 2e-64 | transcription factor MYB86-like | ||||
TrEMBL | A0A2R6PDQ8 | 1e-115 | A0A2R6PDQ8_ACTCH; Transcription factor like | ||||
STRING | EOY20835 | 2e-48 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18771 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 4e-19 | myb domain protein 86 |