PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn297951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 189aa    MW: 20709 Da    PI: 4.3924
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn297951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.8e-4031123799
      DUF260   7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++
  Achn297951  31 FLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVSSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDSANS 123
                 89**************************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.69724125IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3831122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSADGDDTGV SDDDDTGFTA FIGENGADEE FLRRKCMPGC IFAPYFPPEE PQKFANVHKI  60
FGASNVTKLL NELLPHQRED AVSSLAYEAE ARVRDPVYGC VGAITFLQRQ VERLQKELDS  120
ANSDLIRYAC NDIQSSLPAP PGVNLVHPTV PTRQRHEGEI FYQTPSSFQF PYSPLPWNES  180
PSGGGGNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-63231389127LOB family transfactor Ramosa2.1
5ly0_B2e-63231389127LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476856.19e-81protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476857.19e-81protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476858.19e-81protein LATERAL ORGAN BOUNDARIES
RefseqXP_015385245.19e-81protein LATERAL ORGAN BOUNDARIES
RefseqXP_024953801.19e-81protein LATERAL ORGAN BOUNDARIES
RefseqXP_024953802.19e-81protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML44e-63LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2R6PDH91e-104A0A2R6PDH9_ACTCH; Protein LATERAL ORGAN BOUNDARIES like
STRINGXP_006476856.14e-80(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-65LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]