PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn297951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20709 Da PI: 4.3924 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.6 | 5.8e-40 | 31 | 123 | 7 | 99 |
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++ Achn297951 31 FLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVSSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDSANS 123 89**************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.697 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-38 | 31 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSADGDDTGV SDDDDTGFTA FIGENGADEE FLRRKCMPGC IFAPYFPPEE PQKFANVHKI 60 FGASNVTKLL NELLPHQRED AVSSLAYEAE ARVRDPVYGC VGAITFLQRQ VERLQKELDS 120 ANSDLIRYAC NDIQSSLPAP PGVNLVHPTV PTRQRHEGEI FYQTPSSFQF PYSPLPWNES 180 PSGGGGNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-63 | 23 | 138 | 9 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-63 | 23 | 138 | 9 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476856.1 | 9e-81 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_006476857.1 | 9e-81 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_006476858.1 | 9e-81 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_015385245.1 | 9e-81 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_024953801.1 | 9e-81 | protein LATERAL ORGAN BOUNDARIES | ||||
Refseq | XP_024953802.1 | 9e-81 | protein LATERAL ORGAN BOUNDARIES | ||||
Swissprot | Q9FML4 | 4e-63 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2R6PDH9 | 1e-104 | A0A2R6PDH9_ACTCH; Protein LATERAL ORGAN BOUNDARIES like | ||||
STRING | XP_006476856.1 | 4e-80 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-65 | LBD family protein |
Publications ? help Back to Top | |||
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