PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn296901
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 424aa    MW: 48236.1 Da    PI: 9.2332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn296901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067496123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C++ F r  nL+ H r+H
  Achn296901 74 YVCEICNQGFQRDQNLQMHRRRH 96
                9*********************9 PP

2zf-C2H215.54.8e-05152173223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++C+k +  +s++k H++t+
  Achn296901 152 ICEKCSKGYAVQSDFKAHLKTC 173
                 7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-57197No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PROSITE patternPS01359076156IPR019786Zinc finger, PHD-type, conserved site
SMARTSM00355210115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4142172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035557151178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLMLGFLNQS SGNMLSSSRN NVNSNKNNLS SSDLYGSLEN GSNSKRKRRP AGTPDPDAEV  60
VSLSPRTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRDTPMV RKRVFVCPEP  120
SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WICEKCSKGY AVQSDFKAHL KTCGTRGHSC  180
DCGRVFSRVE SFIEHQDACN MEHLRSESQS LQQPAFLSRT ASSPSPSSDN NNFNHTLPAW  240
TFPKQTTDHH NSNIASRKSS CCHNLELQLL TTTTSSSTPQ YRNPKKIDEN HSTQLQLSIG  300
SSSDLVMIER NNYMVDQFDT ANAMKEKAYA EEARREAKRQ IELAEQEFAN AKITRQQAQA  360
ELDNAKALKD HATKQISSTI LQITCRACMQ QFKAIRPPHH ENYMSLSSSI TQDEVHDRRF  420
RQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-18147200356Zinc finger protein JACKDAW
5b3h_F7e-18147200356Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014626.20.0PREDICTED: protein indeterminate-domain 16
SwissprotF4IPE31e-146IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2R6PCM90.0A0A2R6PCM9_ACTCH; Protein SHOOT GRAVITROPISM like
STRINGEOY322450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-133C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]