PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 300aa    MW: 32604.9 Da    PI: 5.0079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18218251134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Achn294851 218 CSHCQVQKTPQWRAGPLGAKTLCNACGVRYKSGR 251
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.345212248IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-13212266IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-13214275No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14216249IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-13217266No hitNo description
PfamPF003201.5E-16218251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEYGIEARAL KSSVLSELAV ISNQQALFDE FHCVNGVTCD DFSVDVFLDF SNEELTDNFG  60
EEDSEEEEKD SLSTISQDRV EDDSSNSTTF SGTGDSGSIS AGELAVAEST SMNRPEPESR  120
QEIQRTPVLC FSSPVPAKAR SKRARPSGRA WYRDLPSLSE SSSTPSSSSG SSQTSVLFFS  180
NPVRDLGDGV LKPPAKKQKR PTAETDGEAG GCQTQRRCSH CQVQKTPQWR AGPLGAKTLC  240
NACGVRYKSG RLFPEYRPAC SPTFSGDVHS NSHRKVLEMR RKKEVPEAES GFTSMVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116845.11e-104GATA transcription factor 5-like
RefseqXP_028116847.11e-104GATA transcription factor 5-like
RefseqXP_028116848.11e-104GATA transcription factor 5-like
SwissprotQ9FH573e-58GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2R6R6Q40.0A0A2R6R6Q4_ACTCH; GATA transcription factor
STRINGXP_008236855.17e-81(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-49GATA transcription factor 5