PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn294661
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 405aa    MW: 46195.2 Da    PI: 6.2428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn294661genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.1e-49291542128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++   +
  Achn294661  29 MPGFRFHPTEEELIEFYLRRKVEGKRFTV-ELITFLDLYRYDPWELPAMATIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENFLSI 126
                 79*************************99.89***************888889****************************************99999* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+apkg +t+W+m+eyrl
  Achn294661 127 GLKKTLVFYSGKAPKGIRTSWIMNEYRL 154
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5628175IPR003441NAC domain
PROSITE profilePS5100555.60628175IPR003441NAC domain
PfamPF023651.0E-2430154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSSQDHESNE HDNRDHDDDD DEHEHDLVMP GFRFHPTEEE LIEFYLRRKV EGKRFTVELI  60
TFLDLYRYDP WELPAMATIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK ATGADRMIRS  120
ENFLSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPQQETE RLQKAEISLC RVYKRPGVED  180
HPSVPRSLPT RASSSRATQI NRSQAQPFGG HSMQSQVDEV EKMSEASASS STDVGTSLGL  240
SNPNPYVGSN LHRISYKSPR ISDIPDPTEY EQILSSFSAS RLASMASPLA PPSQEGCPNL  300
VANSTTTAAA TVFTSSTTTS LVPSQNYIPV DDLHRLINLQ QASITHQQQQ QQQQQQQQYF  360
QNHLYQYSSQ FPNLQPQSVS LPLNMVWDWN SINEGNKDFT APFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-553017519165NO APICAL MERISTEM PROTEIN
1ut4_B5e-553017519165NO APICAL MERISTEM PROTEIN
1ut7_A5e-553017519165NO APICAL MERISTEM PROTEIN
1ut7_B5e-553017519165NO APICAL MERISTEM PROTEIN
4dul_A5e-553017519165NAC domain-containing protein 19
4dul_B5e-553017519165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106559.11e-155NAC domain-containing protein 35-like isoform X1
RefseqXP_028106561.11e-155NAC domain-containing protein 35-like isoform X2
TrEMBLA0A2R6R6M30.0A0A2R6R6M3_ACTCH; NAC domain-containing protein
STRINGcassava4.1_009166m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-111NAC domain containing protein 35