PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn294661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 46195.2 Da PI: 6.2428 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.7 | 1.1e-49 | 29 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ + Achn294661 29 MPGFRFHPTEEELIEFYLRRKVEGKRFTV-ELITFLDLYRYDPWELPAMATIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENFLSI 126 79*************************99.89***************888889****************************************99999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+g+apkg +t+W+m+eyrl Achn294661 127 GLKKTLVFYSGKAPKGIRTSWIMNEYRL 154 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-56 | 28 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.606 | 28 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 30 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MSSQDHESNE HDNRDHDDDD DEHEHDLVMP GFRFHPTEEE LIEFYLRRKV EGKRFTVELI 60 TFLDLYRYDP WELPAMATIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK ATGADRMIRS 120 ENFLSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPQQETE RLQKAEISLC RVYKRPGVED 180 HPSVPRSLPT RASSSRATQI NRSQAQPFGG HSMQSQVDEV EKMSEASASS STDVGTSLGL 240 SNPNPYVGSN LHRISYKSPR ISDIPDPTEY EQILSSFSAS RLASMASPLA PPSQEGCPNL 300 VANSTTTAAA TVFTSSTTTS LVPSQNYIPV DDLHRLINLQ QASITHQQQQ QQQQQQQQYF 360 QNHLYQYSSQ FPNLQPQSVS LPLNMVWDWN SINEGNKDFT APFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-55 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-55 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-55 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-55 | 30 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-55 | 30 | 175 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-55 | 30 | 175 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028106559.1 | 1e-155 | NAC domain-containing protein 35-like isoform X1 | ||||
Refseq | XP_028106561.1 | 1e-155 | NAC domain-containing protein 35-like isoform X2 | ||||
TrEMBL | A0A2R6R6M3 | 0.0 | A0A2R6R6M3_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_009166m | 1e-147 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-111 | NAC domain containing protein 35 |