PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn293491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 39792.6 Da PI: 6.1857 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.8e-56 | 13 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv ++++++ +++ evd++kvePwdLp k++ +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdkev++ ++l Achn293491 13 LPPGFRFHPTDEELITHYLSEKVLNTSFNA-RIVGEVDLNKVEPWDLPCKANMGEREWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEVYQ-MKTL 109 79***************************9.89***************988999****************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgek++Wvmheyrle Achn293491 110 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 139 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-62 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.531 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-29 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEKVAYDEEE IKLPPGFRFH PTDEELITHY LSEKVLNTSF NARIVGEVDL NKVEPWDLPC 60 KANMGEREWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEVYQMKTLV GMKKTLVFYK 120 GRAPKGEKSN WVMHEYRLEG KCSFPNLPET SKNEWVICRI FQKGSDGKRT HFSRLAMVKN 180 YGEKLDSRNL PPLMEYSDYS DNQTRTNNTS HVSHVTCFSH QSQSENPEND TVQSFNKIPL 240 LPSDTSPVSM LCSNSSVLDS LFSTQLVPYT GNSDYQGGDL RFSIQNNGRI DKRFAKSEFL 300 NDTRKMSTDL SLVVSGYDEM GQGYFRDQDD LIFSDGLVDD CLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 10 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 10 | 169 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 10 | 169 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028111639.1 | 1e-136 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-109 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2R6RYN4 | 0.0 | A0A2R6RYN4_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_14s0108g01070.t01 | 1e-128 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-112 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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