PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn292671

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 413aa MW: 44898.8 Da PI: 7.7759

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn292671	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.5	7.2e-22	17	108	10	97
DUF260 10 rkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 r+C ++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q ++e++l Achn292671 17 RQC-DNCSIRPCLqwiksPESQANATVFLAKFYGRAGLINLINAGPDNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWLLCQNAVEAVLN 108 556.58*********************************************************************************998875 PP
2	DUF260	61.1	3.1e-19	155	247	5	97
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 C+++r + +++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q ++e++l Achn292671 155 CRFKRSAVKPKASQWIKSPESQANATVFLAKFYGRAGLINLINAGPDNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWLLCQNAVEAVLN 247 66666666666555445599*******************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.77	3	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-16	17	105	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	11.213	150	251	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-14	155	244	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEAAGGCDRG VRMSCGRQCD NCSIRPCLQW IKSPESQANA TVFLAKFYGR AGLINLINAG 60 PDNLRPAIFR SLLYEACGRI VNPIYGSVGL LWSGNWLLCQ NAVEAVLNGV PIIQIGSEAA 120 ECDNGPPLKA YDIRHVSKED NPAGSKDLHR VRTRCRFKRS AVKPKASQWI KSPESQANAT 180 VFLAKFYGRA GLINLINAGP DNLRPAIFRS LLYEACGRIV NPIYGSVGLL WSGNWLLCQN 240 AVEAVLNGVP IIQIGSEAAE CDNGPPLKAY DIRHVSKEDN PAGSKDLHRV RTRCRFKRSA 300 VKPKASQVWS DPVEDSGHDE SNRSTSHESS LSHQSEMVVA AEEKLNVEGE SRELESVPKP 360 NETADNGEIE LELTLGLDPS SRSHNASPKR KSTGRLGDSF DDGACRIELG LP*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEAAGGCDRG VRMSCGRQCD NCSIRPCLQW IKSPESQANA TVFLAKFYGR AGLINLINAG  60
PDNLRPAIFR SLLYEACGRI VNPIYGSVGL LWSGNWLLCQ NAVEAVLNGV PIIQIGSEAA  120
ECDNGPPLKA YDIRHVSKED NPAGSKDLHR VRTRCRFKRS AVKPKASQWI KSPESQANAT  180
VFLAKFYGRA GLINLINAGP DNLRPAIFRS LLYEACGRIV NPIYGSVGLL WSGNWLLCQN  240
AVEAVLNGVP IIQIGSEAAE CDNGPPLKAY DIRHVSKEDN PAGSKDLHRV RTRCRFKRSA  300
VKPKASQVWS DPVEDSGHDE SNRSTSHESS LSHQSEMVVA AEEKLNVEGE SRELESVPKP  360
NETADNGEIE LELTLGLDPS SRSHNASPKR KSTGRLGDSF DDGACRIELG LP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	1e-105	LOB domain-containing protein 41
Swissprot	Q9M886	5e-80	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2R6RYF4	1e-167	A0A2R6RYF4_ACTCH; LOB domain-containing protein
STRING	XP_009607764.1	2e-97	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-75	LOB domain-containing protein 41