PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn292261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 664aa MW: 73893.7 Da PI: 4.5275 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.2 | 1.2e-07 | 54 | 84 | 3 | 37 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK 37 ++h++ E+r RdriN +++Lr+l+Pk+ +kK Achn292261 54 KSHSQSEKRQRDRINALLATLRKLIPKS----DKK 84 79*************************7....455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50177 | 16.699 | 11 | 157 | IPR018222 | Nuclear transport factor 2, eukaryote |
SuperFamily | SSF47459 | 2.36E-6 | 51 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.223 | 51 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-5 | 54 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-7 | 54 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-4 | 54 | 86 | No hit | No description |
Pfam | PF02136 | 1.5E-14 | 93 | 155 | IPR002075 | Nuclear transport factor 2 |
SuperFamily | SSF54427 | 3.02E-16 | 99 | 158 | IPR032710 | NTF2-like domain |
Gene3D | G3DSA:3.10.450.50 | 5.8E-17 | 100 | 160 | IPR032710 | NTF2-like domain |
CDD | cd00780 | 3.91E-19 | 101 | 159 | IPR018222 | Nuclear transport factor 2, eukaryote |
SuperFamily | SSF48371 | 1.38E-7 | 337 | 395 | IPR016024 | Armadillo-type fold |
Pfam | PF00637 | 2.7E-7 | 337 | 396 | IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
Gene3D | G3DSA:1.25.40.10 | 1.1E-11 | 339 | 396 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF48371 | 1.47E-14 | 398 | 521 | IPR016024 | Armadillo-type fold |
PROSITE profile | PS50236 | 10.292 | 433 | 521 | IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
Pfam | PF00637 | 8.8E-9 | 434 | 521 | IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
Gene3D | G3DSA:1.25.40.10 | 2.8E-4 | 472 | 521 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF50989 | 5.36E-28 | 526 | 628 | IPR001473 | Clathrin, heavy chain, propeller, N-terminal |
Gene3D | G3DSA:2.130.10.110 | 2.7E-42 | 526 | 661 | IPR016025 | Clathrin, heavy chain, linker/propeller domain |
Pfam | PF09268 | 8.7E-10 | 629 | 652 | IPR015348 | Clathrin, heavy chain, linker, core motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006886 | Biological Process | intracellular protein transport | ||||
GO:0016192 | Biological Process | vesicle-mediated transport | ||||
GO:0030130 | Cellular Component | clathrin coat of trans-Golgi network vesicle | ||||
GO:0030132 | Cellular Component | clathrin coat of coated pit | ||||
GO:0005198 | Molecular Function | structural molecule activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MGWLVNDHIT YESFEILFLS MATTFQIHGG YGSSWSMPFG GIKEDGSSTS TASKSHSQSE 60 KRQRDRINAL LATLRKLIPK SDKKVSEPYC IESIKKEVSA TAEIKSVDAQ ESYNGGVHVL 120 VTGYLAGNDN MIRNFSQTFF LAPQDKGYFV LNDIVCYVED INHHNGNQNS NNYVELLLTP 180 EQDHSPLQEI HVSEQTVDPI EVNEEEVLNP SPSNNGEVSA VEEEVPVAEV VDEVPDDSLM 240 VVESNSKIEE VPKKSYASIV MDMKESAVML SSPVLAPFRS VAKIQEQQVN LSLASASAAE 300 TLVSGSDSME NGVINLAGEL GCMLIEGPWV LVGQPNFVKA GHLLLVKPYM VSIQSNNVTA 360 VNEALNEIYV AEEDYDRLRE SIDLHDSFDQ IGLAQKSLVE FFGTLSRELA LECMKELLLV 420 NLRGNLQIIV QVAKEYCEQL GVDACIKLFE QFKSYEGLYF FLGSYLSSRR YEFYRELVSE 480 GSQDVHIHNA LGKIIIDNNN NPEHFLTTNP YYDSRVVVEY CVILFKGRPS FTKKQADLFF 540 PPDFGDDFPV AMQYHAMLFV VWQISHKYSL IYVITKLGLL FVYDLDTATA VYRNRISPDP 600 IFLTAEASSV GGFYAINRRG QVLLATVNEA TIVPFVSGQL NNLELAVNLA KRGNLPGAEN 660 LVH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1utc_A | 2e-29 | 527 | 661 | 239 | 363 | CLATHRIN HEAVY CHAIN |
1utc_B | 2e-29 | 527 | 661 | 239 | 363 | CLATHRIN HEAVY CHAIN |
3gc3_B | 2e-29 | 527 | 661 | 239 | 363 | Clathrin heavy chain 1 |
3gd1_I | 2e-29 | 527 | 661 | 239 | 363 | Clathrin heavy chain 1 |
5m5r_A | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5s_A | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5s_B | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5t_A | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5t_B | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5u_A | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5u_B | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5v_A | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m5v_B | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m61_A | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
5m61_B | 2e-29 | 527 | 661 | 241 | 365 | Clathrin heavy chain 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 2e-08 | zinc finger WD40 repeat protein 1 |