PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn292261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 664aa    MW: 73893.7 Da    PI: 4.5275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn292261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-075484337
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskK 37
                ++h++ E+r RdriN  +++Lr+l+Pk+    +kK
  Achn292261 54 KSHSQSEKRQRDRINALLATLRKLIPKS----DKK 84
                79*************************7....455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5017716.69911157IPR018222Nuclear transport factor 2, eukaryote
SuperFamilySSF474592.36E-65189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.22351101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-55485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-75483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-45486No hitNo description
PfamPF021361.5E-1493155IPR002075Nuclear transport factor 2
SuperFamilySSF544273.02E-1699158IPR032710NTF2-like domain
Gene3DG3DSA:3.10.450.505.8E-17100160IPR032710NTF2-like domain
CDDcd007803.91E-19101159IPR018222Nuclear transport factor 2, eukaryote
SuperFamilySSF483711.38E-7337395IPR016024Armadillo-type fold
PfamPF006372.7E-7337396IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
Gene3DG3DSA:1.25.40.101.1E-11339396IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF483711.47E-14398521IPR016024Armadillo-type fold
PROSITE profilePS5023610.292433521IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
PfamPF006378.8E-9434521IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
Gene3DG3DSA:1.25.40.102.8E-4472521IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF509895.36E-28526628IPR001473Clathrin, heavy chain, propeller, N-terminal
Gene3DG3DSA:2.130.10.1102.7E-42526661IPR016025Clathrin, heavy chain, linker/propeller domain
PfamPF092688.7E-10629652IPR015348Clathrin, heavy chain, linker, core motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0030130Cellular Componentclathrin coat of trans-Golgi network vesicle
GO:0030132Cellular Componentclathrin coat of coated pit
GO:0005198Molecular Functionstructural molecule activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MGWLVNDHIT YESFEILFLS MATTFQIHGG YGSSWSMPFG GIKEDGSSTS TASKSHSQSE  60
KRQRDRINAL LATLRKLIPK SDKKVSEPYC IESIKKEVSA TAEIKSVDAQ ESYNGGVHVL  120
VTGYLAGNDN MIRNFSQTFF LAPQDKGYFV LNDIVCYVED INHHNGNQNS NNYVELLLTP  180
EQDHSPLQEI HVSEQTVDPI EVNEEEVLNP SPSNNGEVSA VEEEVPVAEV VDEVPDDSLM  240
VVESNSKIEE VPKKSYASIV MDMKESAVML SSPVLAPFRS VAKIQEQQVN LSLASASAAE  300
TLVSGSDSME NGVINLAGEL GCMLIEGPWV LVGQPNFVKA GHLLLVKPYM VSIQSNNVTA  360
VNEALNEIYV AEEDYDRLRE SIDLHDSFDQ IGLAQKSLVE FFGTLSRELA LECMKELLLV  420
NLRGNLQIIV QVAKEYCEQL GVDACIKLFE QFKSYEGLYF FLGSYLSSRR YEFYRELVSE  480
GSQDVHIHNA LGKIIIDNNN NPEHFLTTNP YYDSRVVVEY CVILFKGRPS FTKKQADLFF  540
PPDFGDDFPV AMQYHAMLFV VWQISHKYSL IYVITKLGLL FVYDLDTATA VYRNRISPDP  600
IFLTAEASSV GGFYAINRRG QVLLATVNEA TIVPFVSGQL NNLELAVNLA KRGNLPGAEN  660
LVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1utc_A2e-29527661239363CLATHRIN HEAVY CHAIN
1utc_B2e-29527661239363CLATHRIN HEAVY CHAIN
3gc3_B2e-29527661239363Clathrin heavy chain 1
3gd1_I2e-29527661239363Clathrin heavy chain 1
5m5r_A2e-29527661241365Clathrin heavy chain 1
5m5s_A2e-29527661241365Clathrin heavy chain 1
5m5s_B2e-29527661241365Clathrin heavy chain 1
5m5t_A2e-29527661241365Clathrin heavy chain 1
5m5t_B2e-29527661241365Clathrin heavy chain 1
5m5u_A2e-29527661241365Clathrin heavy chain 1
5m5u_B2e-29527661241365Clathrin heavy chain 1
5m5v_A2e-29527661241365Clathrin heavy chain 1
5m5v_B2e-29527661241365Clathrin heavy chain 1
5m61_A2e-29527661241365Clathrin heavy chain 1
5m61_B2e-29527661241365Clathrin heavy chain 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-08zinc finger WD40 repeat protein 1