PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn291281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 355aa    MW: 41102.4 Da    PI: 4.258
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn291281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-13116200286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt++ +laL+e+  ++  +l+r++l+  +W+ev++k++++ + e + +qC+++++ l+k+ykk+k  ++   ++  s++++f++++
  Achn291281 116 WTDHSTLALLEVWGDRFLQLGRKSLRSEDWQEVAEKVSDGfKAEWTDTQCRNRLDTLKKKYKKEKSKMEAM-AGYNSKWVFFKKVD 200
                 *************************************77625588***********************997.667779*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-19115201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MADSEDDARY HSAYNSSTRS KHSNRNPSYP INSNYRDDND EEEYEDDEFG EEDEGINHEF  60
NDQEDDDEDE DEEDVENGYD ESKRRQKKRR IESLVSNYEF VPRNPTRGAQ NSPSDWTDHS  120
TLALLEVWGD RFLQLGRKSL RSEDWQEVAE KVSDGFKAEW TDTQCRNRLD TLKKKYKKEK  180
SKMEAMAGYN SKWVFFKKVD MLLNSSNSSA RQQCCLPCGI DSGEYVFMNT RVYLDRSNGL  240
DEMRDSPGES ESYEDDDDDS DGLPPKRRGI GGEENDGSSF GLLADSIQKF GEIYEKIESS  300
KRQQMMELEK MRMDFQRELE VQKKQILERA QAEIAKIRQG DDDETDVSAE NFSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-53AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122156.11e-167trihelix transcription factor ASIL2-like
TrEMBLA0A2R6Q4R30.0A0A2R6Q4R3_ACTCH; Trihelix transcription factor
STRINGVIT_11s0016g04130.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-77Trihelix family protein