PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn290481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 272aa    MW: 30710.7 Da    PI: 6.0983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn290481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.15.1e-122975147
        FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                +fYn Y++ +GFs+r+ +s+ks+++g  + r+f Csk+g+r ++k+ 
  Achn290481 29 DFYNVYGRVMGFSIRICYSTKSQKDGILIGRKFICSKQGTRGKDKRM 75
                6****************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-92975IPR004330FAR1 DNA binding domain
PfamPF105511.0E-1772142IPR018289MULE transposase domain
Gene3DG3DSA:1.20.5.4207.1E-17222266No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSVKENEHFI EDYTPCLQKE FESEEAAYDF YNVYGRVMGF SIRICYSTKS QKDGILIGRK  60
FICSKQGTRG KDKRMTTIFG AALLYDETVE SFEWLFNTFL HAMSVKKPTT IFIDQDAAMA  120
KAISRVLSDV THGLCTFHLN QNALKHLGHL FKVVSTFGRE LNICIFGYED EQELFEAWDS  180
LNRSNYQTFT RIDPLAQYNS SSRNGTVLEP APAPTKTYHY DSNYEPSLEK IAEAHKAARF  240
AVGALAFDDV STAVDYLKKS LELLTNPSAS S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA269333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1-related sequence 5