PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn290421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 549aa    MW: 61951.6 Da    PI: 7.6579
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn290421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.4e-3051135187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++e gf+rs+k+Ckek+en+ k++k++keg++ ++  + +++++fdqlea
  Achn290421  51 RWPRQETLALLKIRSDMDAAFRDSSLKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHKRTKEGRSTKS--EGKNYRFFDQLEA 135
                 8********************************************************************864..4457*******85 PP
2trihelix108.83.6e-34390475187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev aLi++r+e+++++++g  k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Achn290421 390 RWPKTEVEALIKIRTELDSKYQEGVPKGPLWEEISSAMRKVGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 475
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003648110IPR001005SANT/Myb domain
PfamPF138379.4E-2050136No hitNo description
CDDcd122033.16E-2450115No hitNo description
PROSITE profilePS500906.86450108IPR017877Myb-like domain
SMARTSM007170.0013387449IPR001005SANT/Myb domain
CDDcd122032.04E-27389454No hitNo description
Gene3DG3DSA:1.10.10.602.0E-4389446IPR009057Homeodomain-like
PfamPF138371.8E-23389476No hitNo description
PROSITE profilePS500907.503389447IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MLGVLGSSED GTAEAEGGGG GEGGVVGTSL SEEEKVRIEE GERSSCRGVN RWPRQETLAL  60
LKIRSDMDAA FRDSSLKGPL WEEVSRKLAE LGFHRSAKKC KEKFENVYKY HKRTKEGRST  120
KSEGKNYRFF DQLEALENQP NSLQFLPPPR SQPQAMPLTI TNPLPPQPPP PLIVSQVSIP  180
PIPNPINPLL SNQPPPPNPT QNTGMASSHP KMPENSASIS NSSASTSSDV DPERRRKRKR  240
KWEAFFQRLM KEVFQKQEEM QKKFLETLER RDRDRVVREE AWRAQEMARM NREHDLLAHE  300
RSIAATKDAA VIAFLQKVSD QQIPNAPQMQ MQEPPIRHVQ PPPPPPVQPQ PLPQPQPAQL  360
SIHPAANNLE TLKNDNGKDN TNFLPTSSSR WPKTEVEALI KIRTELDSKY QEGVPKGPLW  420
EEISSAMRKV GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDALYREK  480
TSKIGVGDTS SALDPMVPIM VQPEQQWPLS QENDHSNNHD SGEDEEEEDE AVGYEIVTNK  540
ASSVGTGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RRKRKR
2234240RRKRKRK
3235240RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612058e-45BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117969.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2R6Q1060.0A0A2R6Q106_ACTCH; Trihelix transcription factor GT-2 like
STRINGSolyc12g056510.1.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-86Trihelix family protein