PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn290121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 282aa MW: 30664.9 Da PI: 8.4861

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn290121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.2e-37	69	128	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprCdstntkfCy+nny+l qPr+fCk+CrryWt+GGalr vPvGgg+r++ k+ Achn290121 69 PEAGLKCPRCDSTNTKFCYFNNYNLMQPRHFCKTCRRYWTRGGALRSVPVGGGCRRSSKK 128 67889**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	53	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MIFSSSPIYS DHPNWHQLNQ QNHIQQGSFH ETSQLQPPPP PPPVGGGGGN SVRPGSMVDR 60 ARLAKIPQPE AGLKCPRCDS TNTKFCYFNN YNLMQPRHFC KTCRRYWTRG GALRSVPVGG 120 GCRRSSKKVK KSSSSKLGQD QTGPTKSTSE SPSSSGHHFS QLPFMTSLQN LGHYDGGNST 180 GFQMEATGGD AVGQWGSVPF LSGLEAPIHL YHPYQSITHE GVEGHESCGV GVKMDESQLG 240 LNLSRQFISV SENNQYWDGN NTWTEFSGVL NSSSFVGERS A*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177233.1	3e-80	PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A2R6P7X2	0.0	A0A2R6P7X2_ACTCH; Dof zinc finger protein like
STRING	Aquca_003_00022.1	7e-79	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	6e-46	OBF-binding protein 3