PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn288481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 318aa    MW: 34874.4 Da    PI: 7.1266
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn288481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.4e-18239272134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Achn288481 239 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.464233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.9E-15237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-15237296No hitNo description
CDDcd002025.75E-14238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003202.1E-15239272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQWVFGIFEF TVRMDDSHKM VGADFMDEVE CGSFFDQFED FIDFPPDNEC GLSSGGGNND  60
LSSIWPNPSD SLPCSELSVP YEDIIPLEWL SNFMDDSFSD GGMTLNKENL TVNKESSHNQ  120
FKLSSPISVL ESSSSSSSSS TGSCSGGMLL PISATQHGPQ RARSKRLRPT TFNPRPAINL  180
LSPTSVTENH QSVPLPVSSS ESENFVESPI KKKKKKVKLS IPLGPLEMNQ NPPSTVRKCM  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSLH SNSHKKVVEM  300
RNKGGEKIFT SINPSKA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109479.11e-134GATA transcription factor 8-like
RefseqXP_028109480.11e-134GATA transcription factor 8-like
TrEMBLA0A2R6QB151e-170A0A2R6QB15_ACTCH; GATA transcription factor
STRINGXP_009760862.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein