PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn288011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 276aa    MW: 32220.5 Da    PI: 8.2215
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn288011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.62.2e-2534117187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 +W+ +e+++L++ar+e+++++ ++k++k lW+ v+ kmre+g++rs++qCk+kw+nl +ryk + ++e ++    ++++p++++lea
  Achn288011  34 QWSVHETRDLLAARSELDQTFLETKRNKVLWDVVATKMREKGYNRSAEQCKSKWKNLVTRYKGCGNMELEG---MRQQFPFYNELEA 117
                 7********************************************************************97...56679*****985 PP
2Myb_DNA-binding22.72.2e-073490347
                     SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47
                      W+  E   l+ a  +l             W+ +a +m     +R+++qcks+w ++
       Achn288011 34 QWSVHETRDLLAARSELDQTfletkrnkvLWDVVATKMRekgYNRSAEQCKSKWKNL 90
                     599999999999999999889999999999*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4E-63193IPR001005SANT/Myb domain
CDDcd122031.72E-233397No hitNo description
PfamPF138373.0E-2234118No hitNo description
PROSITE profilePS500907.6663591IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGERIMFTHL INFPFMEGHH RATVAVDAGD RFPQWSVHET RDLLAARSEL DQTFLETKRN  60
KVLWDVVATK MREKGYNRSA EQCKSKWKNL VTRYKGCGNM ELEGMRQQFP FYNELEAIFA  120
ARMERMLWIE AEGGSSSGTK NKGVAIASDN EDDNEESDRD KAGSRKKKGK VHKSGNSPSS  180
GGNISVLKET LEEFMKQQMQ IEMEWLKAYK AKEEERRLRE MEWRQTMEAL ESERIVMERG  240
WRQRDEQRRM IEEARADNRD ALISALLNKI RREDM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054174.11e-107PREDICTED: trihelix transcription factor GT-3b-like isoform X1
SwissprotQ9SDW03e-65TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A2R6RXC91e-122A0A2R6RXC9_ACTCH; Trihelix transcription factor GT-3b like
STRINGXP_010264622.11e-105(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-60Trihelix family protein