PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn287391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 29492.4 Da PI: 5.5882 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.6 | 2.8e-25 | 80 | 170 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s+++ i+ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ +w vtk++ HnH+l+ Achn287391 80 DFYYEYAKRTGFTIRTNRIRHSQKDMAIIGRDFVCSREGFRAAKHVLrKDRVLPPRPITREGCKAMIRLAARDGRTWIVTKFVRVHNHKLM 170 6*****************************************9988723333459**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-23 | 80 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVDSSGGHDF FETDGGSDEE TFENFGGHEA KEDELLHCCD SHGAINGDLL FIGSSSSGLN 60 GDCLEPFLGM AFPSLDVARD FYYEYAKRTG FTIRTNRIRH SQKDMAIIGR DFVCSREGFR 120 AAKHVLRKDR VLPPRPITRE GCKAMIRLAA RDGRTWIVTK FVRVHNHKLM TNSKFPGELP 180 IVNILSELIA RTFNLLQEEK DKKIQELNNE LQHEREQSAR FREQLCMILK DLEEHAEFMS 240 IRVEDIVHAM GEIELCDD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010650577.1 | 1e-121 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2R6RRZ9 | 1e-179 | A0A2R6RRZ9_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | VIT_05s0102g00440.t01 | 1e-121 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18960 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-40 | FAR1 family protein |