PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn286961

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 513aa MW: 57904.8 Da PI: 4.4961

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn286961	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	145.1	6.7e-45	147	512	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL + ea++ ++ ela+ +++ + e +sp g++++Rl+ + + + + ++++ ++ aa+++f++++P+ +f+h+taN+ Achn286961 147 QHLLKAYGEAMEMEQRELAEVIVKCIVEKVSPVGETLERLTLNLFQSEGK-------------QGDYLKQESIKNFEAAFNAFYQIFPYGRFAHFTANS 232 6788888999999************************87544332111.............222222334778889999************** PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 a+lea+ ++ e+vHiiDfd+++G+QWp++++a a+R++ lR+T ++ ++ g + eet++rL + A+++g++++ + + +edl + + + Achn286961 233 AVLEAMPENvETVHIIDFDMMEGVQWPPMIEAVAQRQNA---LRLTSIKVEDCGdapLYWRFEETKRRLCNHARSFGLNLKVDEV---GIEDLVTAMGK 325 **9999**********************876...****888866666789*****************98...77777777777 PP GRAS 196 vkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.e 280 +k+ +E l+ n+++ l ++ ++ sl++ +e+L + k l + ++++ + +a + +++ f + l+++ al +s+e ++p e Achn286961 326 IKKrggrREWLVFNCMVGLPHMG-RERSLSH-VKEFLGVAKALlddsatNKGIITIGDGDAAErlkSCTTYGSFFDKNLYHFQALCESMEWNFPVCLaE 422 77777889**********8.4444444.79**987555444677**99655353445788888899*************8766 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 +r +E+ +++++i+++ ++ e ++++ ++ e G++ ++l+e++ ++ak ++++ k ++v ++++++vl W++ +Lv vS Wr Achn286961 423 ARLAMENLFVAPSISSLSWRRKWE------EMREGSDLHAEIGLEGLRLTEENLTEAKEMMAEGK-SLFTVRieaQKQNEMVLEWRGTSLVRVSTWR 512 ************9987776666......5667789999*****************9999.34666655778*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.538	120	490	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-42	147	512	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MMQPQLFQQS SWPFYNIMHS PRDHVGAYGG LQMNGQFLST IFSNEFLEDP MSGDELQSPI 60 PVETIADDME GIDIISCGEF EDVCRWLGED ACEGSLSSEQ LSIEGEDVWS PCPSTKSSEA 120 SMVFPSAQVS PSLPRDGNEI ETQLTIQHLL KAYGEAMEME QRELAEVIVK CIVEKVSPVG 180 ETLERLTLNL FQSEGKQGDY LKQESIKNFE AAFNAFYQIF PYGRFAHFTA NSAVLEAMPE 240 NVETVHIIDF DMMEGVQWPP MIEAVAQRQN ALRLTSIKVE DCGDAPLYWR FEETKRRLCN 300 HARSFGLNLK VDEVGIEDLV TAMGKIKKRG GRREWLVFNC MVGLPHMGRE RSLSHVKEFL 360 GVAKALLDDS ATNKGIITIG DGDAAERLKS CTTYGSFFDK NLYHFQALCE SMEWNFPVCL 420 AEARLAMENL FVAPSISSLS WRRKWEEMRE GSDLHAEIGL EGLRLTEENL TEAKEMMAEG 480 KSLFTVRIEA QKQNEMVLEW RGTSLVRVST WR*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MMQPQLFQQS SWPFYNIMHS PRDHVGAYGG LQMNGQFLST IFSNEFLEDP MSGDELQSPI  60
PVETIADDME GIDIISCGEF EDVCRWLGED ACEGSLSSEQ LSIEGEDVWS PCPSTKSSEA  120
SMVFPSAQVS PSLPRDGNEI ETQLTIQHLL KAYGEAMEME QRELAEVIVK CIVEKVSPVG  180
ETLERLTLNL FQSEGKQGDY LKQESIKNFE AAFNAFYQIF PYGRFAHFTA NSAVLEAMPE  240
NVETVHIIDF DMMEGVQWPP MIEAVAQRQN ALRLTSIKVE DCGDAPLYWR FEETKRRLCN  300
HARSFGLNLK VDEVGIEDLV TAMGKIKKRG GRREWLVFNC MVGLPHMGRE RSLSHVKEFL  360
GVAKALLDDS ATNKGIITIG DGDAAERLKS CTTYGSFFDK NLYHFQALCE SMEWNFPVCL  420
AEARLAMENL FVAPSISSLS WRRKWEEMRE GSDLHAEIGL EGLRLTEENL TEAKEMMAEG  480
KSLFTVRIEA QKQNEMVLEW RGTSLVRVST WR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028077641.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2R6RRR1	0.0	A0A2R6RRR1_ACTCH; Nodulation-signaling pathway 2 protein
STRING	EOY07107	1e-173	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	8e-24	GRAS family protein