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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn286491 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 271aa MW: 29568.6 Da PI: 8.4274 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 104.3 | 7.8e-33 | 55 | 109 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
+Y+eCl+NhAaslGghavDGCgEfmps+ ++ +++++l CaACgCHRnFHRr+ +
Achn286491 55 VYRECLRNHAASLGGHAVDGCGEFMPSPAAThSDPTSLICAACGCHRNFHRRDDD 109
7**************************99999********************976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD125774 | 5.0E-21 | 55 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 1.8E-27 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 26.979 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 3.3E-29 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 9.1E-29 | 158 | 228 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.13E-17 | 160 | 228 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 7.8E-25 | 167 | 223 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 271 aa Download sequence Send to blast |
MDTNTTTTTD NNATPTHSLD TQNKTPPANK SLSFTNSTLK KHSPYDPQPL AVVGVYRECL 60 RNHAASLGGH AVDGCGEFMP SPAATHSDPT SLICAACGCH RNFHRRDDDP SPAALFLDFR 120 RPPPRRGSSP LSSPSPPPPP QPSHHHQNAV ATPATPTEAK AENPSGRKRF RTKFSQDQKE 180 KMHSFSEKLG WKMQRSEEGL IEEFCSEIGV GKGVLKVWMH NNKHTFGKRD THSTTTTNNN 240 NNSHHLHVHH HEDSNGVHLH VSADGSPSSA * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 1e-19 | 168 | 225 | 18 | 75 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028116046.1 | 5e-85 | zinc-finger homeodomain protein 11-like | ||||
| TrEMBL | A0A1U7X8A5 | 5e-80 | A0A1U7X8A5_NICSY; zinc-finger homeodomain protein 9-like | ||||
| STRING | XP_009788342.1 | 8e-81 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1088 | 24 | 85 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69600.1 | 1e-45 | zinc finger homeodomain 1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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