PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn286431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 714aa    MW: 78994.1 Da    PI: 8.9648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn286431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.2e-121670348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48
                     +W t+E++ll++av+++G ++W+++a +++           +t+++c  ++++++
       Achn286431 16 PWGTWEELLLACAVHRHGANRWDSVAIEIQkrsstaslgHLLTPYHCERKYHDLK 70
                     8************************************99889*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.79E-51250IPR009057Homeodomain-like
SMARTSM007176.7E-41372IPR001005SANT/Myb domain
CDDcd001671.49E-51670No hitNo description
PfamPF002495.6E-101669IPR001005SANT/Myb domain
SMARTSM002975.7E-11119423IPR001487Bromodomain
SuperFamilySSF473703.66E-18316420IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.0E-15316420IPR001487Bromodomain
CDDcd043691.11E-16323418No hitNo description
PfamPF004391.0E-9332408IPR001487Bromodomain
PROSITE profilePS5001412.982333404IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MDKPDETTEN REPETPWGTW EELLLACAVH RHGANRWDSV AIEIQKRSST ASLGHLLTPY  60
HCERKYHDLK RRYTPQNDAA SPAEACDANS VPWLDELRKL RVAELRREVE RYDLSIVSLQ  120
LKVKRLKEER EQSLKEDENG GEKSDLEKSV EREREGEENR GEEEMEPESV AGKPVTGEDS  180
DGDNQSVNES NSTDPKSEVQ KTRVEEPEPV RTGEPKSTKP VGEDSWNGSS DSIEKRDPVR  240
ESLKAEPEGG VSDSPELWES VAESKGGGGE DVAAKESSDV QSSASKSRKE LGSDKVRSVS  300
ISGDEPENED QSAAVKRTSV KLHSLIDFLE IVWSHKLGSV FERRLESQET PEYRNLIRQH  360
IDFETIRTRL NDGWYSSCNR KLYRDLLLLV NNAILFFGKE SRESNAANEL QQLISKEIPQ  420
TNLKLDSSAE EGTSTPSLPL SSKPEPEPEP EPEPSDSLLL KPKISGPIIV CRKRSSIAAK  480
ASGSSTGPAD RKREKKAALL EDKPILDWKQ SNKPSDSAEE NLITKKRTRD RFTSGSKSST  540
KNGKNRTNTT PNKNSETPSN QNQGKRAYSS EHSEPKSEKN TNSPVSGAKK RGAANFLNRM  600
KRGLSTDNGP LLDTLKSSTP NSSNSNKGGA EQQKNKNGKG KSEVKKEQPS RRGSGARQAK  660
EPVSPAKRNV GRPPKRAAAP SPSTPAPATN KRSREGGYTE AVASRQPKKR SRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062768.10.0cilia- and flagella-associated protein 251-like
TrEMBLA0A2R6P2P40.0A0A2R6P2P4_ACTCH; Bromodomain-containing protein
STRINGXP_010257462.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.18e-93DNA-binding bromodomain-containing protein