PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn282651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 340aa    MW: 38637 Da    PI: 6.8771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn282651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.6e-32209354128
         NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl
  Achn282651  20 PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS-SLRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 93 
                 4569*************************************.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.0791143IPR003441NAC domain
SuperFamilySSF1019411.83E-3420103IPR003441NAC domain
PfamPF023651.2E-152093IPR003441NAC domain
SuperFamilySSF1019411.83E-34131143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTVQIKFDLK DEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS  60
SLRRIGMRKT LVFYKGRAPH GQKSDWIMHE YRLDDHSSHD ATHPLFEYFF QTSKSIGEYI  120
QANHVGGDSL PEEGWVVCRV FKKKNYHKAL ESPQSSSPTS MDLRSQIIRN STNNDGILDQ  180
ILHYMGKSCK QETQTITNPN NGHMLYLPSF NTAIDALQDR FTHLPRLETA PTNSPFDHEA  240
LDDMFLETEP SCTEQGSGQR DWVVLDRLVA SQLNGQDDTS NDDFCFPVDH NIQLANLRSN  300
RVLTNVQPPC QGYNSEIDLW NFARSSSASS SDPLCHLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-282114573170NAC domain-containing protein 19
3swm_B2e-282114573170NAC domain-containing protein 19
3swm_C2e-282114573170NAC domain-containing protein 19
3swm_D2e-282114573170NAC domain-containing protein 19
3swp_A2e-282114573170NAC domain-containing protein 19
3swp_B2e-282114573170NAC domain-containing protein 19
3swp_C2e-282114573170NAC domain-containing protein 19
3swp_D2e-282114573170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279545.11e-125PREDICTED: NAC domain-containing protein 43
SwissprotQ84WP62e-79NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2R6QMV10.0A0A2R6QMV1_ACTCH; NAC domain-containing protein
STRINGVIT_02s0025g02710.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-70NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]