PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn282651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38637 Da PI: 6.8771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.6e-32 | 20 | 93 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl Achn282651 20 PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS-SLRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 93 4569*************************************.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.079 | 1 | 143 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-34 | 20 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 20 | 93 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-34 | 131 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MTVQIKFDLK DEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS 60 SLRRIGMRKT LVFYKGRAPH GQKSDWIMHE YRLDDHSSHD ATHPLFEYFF QTSKSIGEYI 120 QANHVGGDSL PEEGWVVCRV FKKKNYHKAL ESPQSSSPTS MDLRSQIIRN STNNDGILDQ 180 ILHYMGKSCK QETQTITNPN NGHMLYLPSF NTAIDALQDR FTHLPRLETA PTNSPFDHEA 240 LDDMFLETEP SCTEQGSGQR DWVVLDRLVA SQLNGQDDTS NDDFCFPVDH NIQLANLRSN 300 RVLTNVQPPC QGYNSEIDLW NFARSSSASS SDPLCHLSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-28 | 21 | 145 | 73 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279545.1 | 1e-125 | PREDICTED: NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 2e-79 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2R6QMV1 | 0.0 | A0A2R6QMV1_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_02s0025g02710.t01 | 1e-124 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-70 | NAC family protein |