PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn282481

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 327aa MW: 36154.7 Da PI: 8.4382

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn282481	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.7	1e-44	16	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +k+++ ++++ +++++vd++k+ePwdLp + + rd+ky+tg r+nrat++gyWk+tgkdke++++ ++e Achn282481 16 LPPGFRFHPTDEELITYYLINKISDANFTA-RAVTDVDLNKSEPWDLP-----G-------TLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvSSE 101 79***********************999.88***********.....2.......579*************************998999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grap+gekt+Wvmheyr+ Achn282481 102 LVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 131 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-50	9	136	IPR003441	NAC domain
PROSITE profile	PS51005	42.606	16	152	IPR003441	NAC domain
Pfam	PF02365	3.1E-24	17	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEMQGEEGVS MKEEKLPPGF RFHPTDEELI TYYLINKISD ANFTARAVTD VDLNKSEPWD 60 LPGTLRDRKY PTGVRTNRAT NTGYWKTTGK DKEIFNSVSS ELVGMKKTLV FYRGRAPRGE 120 KTNWVMHEYR IHSKSAIRTP KKSSGVKKYP SNHSSSRAAL LNPYSLEIGP SAAMHYSQML 180 QAAEACQFPS VGRNHMMSND MAEHMSSRVL RSNPSTSLVN FPIQPQLINY PPEAGCFTIS 240 GLNLNLGGGG ATSSGFHHPP PPPPVVMNQQ DHHVSSSIFS GGLASEAVYG TAEVTANNNA 300 NHVANTNRFM TMDHCLELDN YWPAPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-38	3	131	4	142	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-38	3	131	4	142	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-38	3	131	4	142	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-38	3	131	4	142	NO APICAL MERISTEM PROTEIN
3swm_A	5e-38	3	131	7	145	NAC domain-containing protein 19
3swm_B	5e-38	3	131	7	145	NAC domain-containing protein 19
3swm_C	5e-38	3	131	7	145	NAC domain-containing protein 19
3swm_D	5e-38	3	131	7	145	NAC domain-containing protein 19
3swp_A	5e-38	3	131	7	145	NAC domain-containing protein 19
3swp_B	5e-38	3	131	7	145	NAC domain-containing protein 19
3swp_C	5e-38	3	131	7	145	NAC domain-containing protein 19
3swp_D	5e-38	3	131	7	145	NAC domain-containing protein 19
4dul_A	4e-38	3	131	4	142	NAC domain-containing protein 19
4dul_B	4e-38	3	131	4	142	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014705.1	1e-130	NAC domain-containing protein 92 isoform X2
TrEMBL	A0A2R6QMY1	0.0	A0A2R6QMY1_ACTCH; NAC domain-containing protein
STRING	cassava4.1_011442m	1e-128	(Manihot esculenta)
STRING	XP_002527980.1	1e-128	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-78	NAC domain containing protein 38