PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn282481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 36154.7 Da PI: 8.4382 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.7 | 1e-44 | 16 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +k+++ ++++ +++++vd++k+ePwdLp + + rd+ky+tg r+nrat++gyWk+tgkdke++++ ++e Achn282481 16 LPPGFRFHPTDEELITYYLINKISDANFTA-RAVTDVDLNKSEPWDLP-----G-------TLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvSSE 101 79*************************999.88***************.....2.......579*****************************998999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grap+gekt+Wvmheyr+ Achn282481 102 LVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 131 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-50 | 9 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.606 | 16 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 17 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEMQGEEGVS MKEEKLPPGF RFHPTDEELI TYYLINKISD ANFTARAVTD VDLNKSEPWD 60 LPGTLRDRKY PTGVRTNRAT NTGYWKTTGK DKEIFNSVSS ELVGMKKTLV FYRGRAPRGE 120 KTNWVMHEYR IHSKSAIRTP KKSSGVKKYP SNHSSSRAAL LNPYSLEIGP SAAMHYSQML 180 QAAEACQFPS VGRNHMMSND MAEHMSSRVL RSNPSTSLVN FPIQPQLINY PPEAGCFTIS 240 GLNLNLGGGG ATSSGFHHPP PPPPVVMNQQ DHHVSSSIFS GGLASEAVYG TAEVTANNNA 300 NHVANTNRFM TMDHCLELDN YWPAPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-38 | 3 | 131 | 4 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-38 | 3 | 131 | 4 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-38 | 3 | 131 | 4 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-38 | 3 | 131 | 4 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swm_B | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swm_C | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swm_D | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swp_A | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swp_B | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swp_C | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
3swp_D | 5e-38 | 3 | 131 | 7 | 145 | NAC domain-containing protein 19 |
4dul_A | 4e-38 | 3 | 131 | 4 | 142 | NAC domain-containing protein 19 |
4dul_B | 4e-38 | 3 | 131 | 4 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025014705.1 | 1e-130 | NAC domain-containing protein 92 isoform X2 | ||||
TrEMBL | A0A2R6QMY1 | 0.0 | A0A2R6QMY1_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_011442m | 1e-128 | (Manihot esculenta) | ||||
STRING | XP_002527980.1 | 1e-128 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-78 | NAC domain containing protein 38 |