PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn280751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 328aa MW: 36899.8 Da PI: 6.3897

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn280751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60	6e-19	235	315	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li +r e++ r+ k++++ Wee s+++ + g++rsp qCk+ w +l ++y++ k e+++ +++pyf++++ Achn280751 235 KWKPEEVKKLIIMRGELHGRFLVVKRRMAFWEELSANLLADGVNRSPGQCKSLWTSLVQKYEESKSDERSN-----RSWPYFEDMN 315 7******************************************************************84.....56****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.236	228	292	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.1E-4	232	294	IPR009057	Homeodomain-like
Pfam	PF13837	3.9E-16	233	317	No hit	No description
CDD	cd12203	4.32E-18	234	299	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MYSDGDKAFG TSSELCMDER LRISSDGIIV ISMEILRPED ADGVEKTLKG KIRITTRCLW 60 LDKGKLLDEL HKAAHAALSR CPVNCPLAHM ERIVSEVLRK MVRKYSSKRP EVIAIAIENP 120 ASVLSEELNT RLSCKSRAGF GTSALRKVVD GQPKTRQLNG IQEEEGSSRV HSINNTEQKF 180 EERGSEDERL LSEEATTSGS ESAESFSLNS EDSDDFWKSF VASSPIDQLS ATRNKWKPEE 240 VKKLIIMRGE LHGRFLVVKR RMAFWEELSA NLLADGVNRS PGQCKSLWTS LVQKYEESKS 300 DERSNRSWPY FEDMNKILSD MEATATK*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058466.1	1e-177	ribonuclease J-like isoform X3
Refseq	XP_028058467.1	1e-177	ribonuclease J-like isoform X4
Refseq	XP_028058468.1	1e-177	ribonuclease J-like isoform X4
Refseq	XP_028058469.1	1e-177	ribonuclease J-like isoform X4
Refseq	XP_028058470.1	1e-177	ribonuclease J-like isoform X4
Swissprot	Q84W56	1e-119	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A2R6PEI4	0.0	A0A2R6PEI4_ACTCH; Ribonuclease
STRING	EOY22451	1e-138	(Theobroma cacao)
STRING	XP_002511207.1	1e-139	(Ricinus communis)
STRING	PGSC0003DMT400039415	1e-141	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5874	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	1e-114	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]