PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn279941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 335aa    MW: 35137.1 Da    PI: 6.6155
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn279941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06209229626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ ++ +GtC+yG++C+ aH 
  Achn279941 209 CKSYSSSGTCSYGSKCRIAHH 229
                 *****************8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-8181205IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409183202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.54203231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5208230IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4209230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEGPYGNDSS RVSKLKAFNG NVLTINSQRD NHQFYIGGGR LHHPPKSPTL DPYSENLDSA  60
LIRYLRSGSP ESPVAGDAFK APVAGAMISH PFLSGNSSSS GGSVGYLSLR GSSSTVSPLS  120
AVENLETPPS RSPSVFKTPV KVEEDVLVMD GILVESVSGG RMRLSASSDS SGSSSLSLGS  180
KSFYKTEICR SWEDSCHCRY GSKCQAQTCK SYSSSGTCSY GSKCRIAHHQ VMTAAISPTG  240
PSVPAATLAT TQIISPIETE NSSESSSKSM SSGNITIALA DWSPLDDGIE VSLPSSASTN  300
EVPSREAVDA YINSVLYGPS RGKRLPVFAE ICPE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028089505.11e-108zinc finger CCCH domain-containing protein 58-like isoform X2
TrEMBLA0A2R6RGQ90.0A0A2R6RGQ9_ACTCH; Zinc finger protein like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824