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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn278561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 108aa MW: 12573.4 Da PI: 8.737 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.1 | 3.6e-11 | 1 | 46 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 mre+ f rs+++C++kw+nl k++kk ++++++++ s + + +++le Achn278561 1 MREKEFDRSATMCTDKWRNLLKEFKKARHQDRSGA---SAKLSCYKELE 46 89******************************984...55567888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-7 | 1 | 48 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MREKEFDRSA TMCTDKWRNL LKEFKKARHQ DRSGASAKLS CYKELEELLR DRGKNGAYKG 60 PTTFRKSNCI FSFRIKVIVE SDLSVCLTCF GLIVNSYVWE LEYWDGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-18 | 1 | 44 | 43 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028072987.1 | 2e-30 | mediator of RNA polymerase II transcription subunit 15a-like isoform X1 | ||||
Refseq | XP_028072988.1 | 2e-30 | mediator of RNA polymerase II transcription subunit 15a-like isoform X1 | ||||
Refseq | XP_028072989.1 | 2e-30 | mediator of RNA polymerase II transcription subunit 15a-like isoform X1 | ||||
Refseq | XP_028072990.1 | 2e-30 | trihelix transcription factor GT-4-like isoform X2 | ||||
Swissprot | Q9FX53 | 1e-21 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A2R6QP65 | 1e-72 | A0A2R6QP65_ACTCH; Trihelix transcription factor GT-1 like | ||||
STRING | cassava4.1_009069m | 5e-26 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 4e-25 | Trihelix family protein |
Publications ? help Back to Top | |||
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