PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn276751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 826aa MW: 90574.6 Da PI: 6.0507 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.2e-19 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Achn276751 18 KYVRYTPEQVEALERVYHECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP | |||||||
2 | START | 181 | 6.9e-57 | 161 | 369 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+s+g g+++l + +l Achn276751 161 IADETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLSTGngGTIELLYLQL 258 68899*****************************************************.8888888888****************************** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+ +Ry+ l +g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ ++ Achn276751 259 YAPTTLAPaRDFWLLRYTSVLDDGSHVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQ 357 ***************************************9988899***************************************************** PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 +t++a+l+++++ Achn276751 358 RTTMAALRQLRQ 369 ********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.758 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.2E-16 | 15 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-17 | 17 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.18E-17 | 18 | 78 | No hit | No description |
Pfam | PF00046 | 2.1E-16 | 19 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-19 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 7.25E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 25.927 | 151 | 379 | IPR002913 | START domain |
CDD | cd08875 | 1.20E-79 | 155 | 370 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 7.9E-24 | 159 | 367 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.47E-37 | 160 | 370 | No hit | No description |
SMART | SM00234 | 1.7E-43 | 160 | 370 | IPR002913 | START domain |
Pfam | PF01852 | 3.2E-54 | 161 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 1.0E-48 | 682 | 824 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence Send to blast |
MAVTSACKEG KMGMDNGKYV RYTPEQVEAL ERVYHECPKP SSLRRQQLIR ECPILCNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQVVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ 120 QTQNAKIATT DTSCESVVTT GQNHLTQHQP RDASPAGLLS IADETLTEFL SKATGTAVEW 180 VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW YRDCRAVDVL 240 NVLSTGNGGT IELLYLQLYA PTTLAPARDF WLLRYTSVLD DGSHVVCERS LNNTQNGPSM 300 PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTLLAQRTT 360 MAALRQLRQI SQEVSQPTVT GWGRRPAALC ALSQRLSKGF NEAVNGFTDE GWSMIEGDGI 420 DDVTLLVNSS PGKMLSANPS YANGFPSISN AVLCAKASML LQNVPPSVLL RFLREHRSEW 480 ADSGIDAYAA AAVKADPCSL PGSRAGTFGG QFMEVIKIEN FGHYRDDMII PGDIFLLQLC 540 SGVDENAIGT CAELIFAPID TSFSDDAPLL PSGFRVIPLD SGTDASSPNR TLDLTSALEV 600 GTTGNRNAGD YSGHVGSGKS VMTLAFQFAF EIHLQENVAA MACQYVRSII ASVQRVALAL 660 SPTRFSSHAG LLAPPGTPEA HTLACWICLS YRCFLGAELL KPVNEGSESI LKTLWYHSEA 720 VMCCSLKELP VFTFANQAGL DMLETTLVAL QDITLEKILD DHGRRTVFSE LPQIMQQGFA 780 CLHGGICLSS MGRTISYERA VAWKVLNDEE TAHCICFMFI NWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028056558.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 isoform X1 | ||||
Refseq | XP_028056559.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 isoform X1 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A2R6Q3C5 | 0.0 | A0A2R6Q3C5_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | EOY29771 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |