PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn275811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 357aa    MW: 39580.2 Da    PI: 5.529
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn275811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.4e-173886250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                  enk+ r vt+ kR+  i KK  EL +LC+++++ + f+++g + +++
  Achn275811 38 MMENKRARMVTYKKRKDCIKKKTMELATLCGIQACAVCFGPDGAVETWP 86
                679*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.322989IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-83087IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-1733104IPR002100Transcription factor, MADS-box
PfamPF003192.5E-163985IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAVSLELLNP LLRDLLRPSS PVKWSGTAET GRRNRPKMME NKRARMVTYK KRKDCIKKKT  60
MELATLCGIQ ACAVCFGPDG AVETWPENPN DVKAVIDLFR ESVKNGKGRG IGGNLGERVK  120
KVEEESGGAK KDELKKGLLG WNDDWVNGLS AEQLMVFLRK LEDKIESVMD KIGFLKMADE  180
QHRAPNYGFE MMNSGIAKNN VEIASSLVCQ NPLQISDYSH NSMASFEIPM NLETPNYCFE  240
MKNSEMAGYR NPLPLGDYCY NSMVNLGVPM QSTPPIWALD YYINPMVSFD TPVNSATPIW  300
HVNCFGDPIS YGETNLTNSM NSQQVLASSV SEVSNTQPSP LDEILLASSS SSSFLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6Q7U40.0A0A2R6Q7U4_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.15e-12AGAMOUS-like 82