PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn275581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 715aa    MW: 82492.8 Da    PI: 8.4515
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn275581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11e-1646132191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y +YA++ GF++ +++s+   +ng+i+  t+ C + gk+  ++ +   + ++r++++t C+ak+++  + d+k+ ++k++leHnH+l+p
  Achn275581  46 EYYASYARQEGFEIMVRSSRLG-DNGSIKYITLACARGGKTVCSSLN---SFKPRPTKKTACDAKINIVSSFDEKFSLSKVVLEHNHSLSP 132
                 69**************998886.9999****************9988...999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1446132IPR004330FAR1 DNA binding domain
PfamPF105512.6E-36252345IPR018289MULE transposase domain
PROSITE profilePS5096610.769537573IPR007527Zinc finger, SWIM-type
PfamPF044346.0E-7543572IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-6548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDLEISCDKE TGGGDELYKS DSEDHSKKIE NPKVGMTFSS KEEVSEYYAS YARQEGFEIM  60
VRSSRLGDNG SIKYITLACA RGGKTVCSSL NSFKPRPTKK TACDAKINIV SSFDEKFSLS  120
KVVLEHNHSL SPGKTRFFRN NKKIDARLKR RLKLNDEGGV NASKNFHSIV VEFGGHEHVP  180
FTEKDYRNFI EKKSRVRLGT GDVEAILTYF TKMQAKNSRF FYVMDLDDDG RLRNVFWADA  240
RSRAAYESFG DVISFDSTYL TNKYDMPLAS FVGVNHHGQS ILLGCGLLSY ENEKTYIWLF  300
KVWLACMCGK APNAIITDQC KAIQGAIAEV FPQTRHRLCL WHIMEKIPKM LSGYSSYESI  360
ESALHNAVYD SITPNEFEDS WREMIEKYDL ENNDWLRNLY NDRYRWIPAH VKDTFWAGMS  420
TTHRNEIMNA FFDGYVNSKT TLKQFIEQYD CALKSKVKKE NKADHASFHF RIPLITEFEI  480
EKQFQEFYTM EKFKEFQDEL RGLIYCNASF VKEEGCVSTF EVEDSIKVGD SRKDVSYNVC  540
YNTKECEVHC SCRLFEFRGI LCRHAVAILH KKKVKKVPSC FILSRWRRDL RRRHSFINSS  600
YNDKETNEQV QRYDKLCNFF YEIAVIGAES EEKFDHLMGI LSEVKGKMQK NDDQLTKSHC  660
PSLSPCNEEL HGISKASTTT MVLSPLPVQT KGRPPSKRKE SKVDQAVRKK RVIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1692702RPPSKRKESKV
2696710KRKESKVDQAVRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107563.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107564.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107565.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107566.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107567.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107568.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107569.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107570.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_028107571.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBLA0A2R6Q7W80.0A0A2R6Q7W8_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGTraes_1AS_F08B3720F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-125FAR1-related sequence 6