PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 770aa    MW: 86771.2 Da    PI: 4.9149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-514265551128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                 lp+G+rF+Ptdeel+++yL+ k++g++  + +vi evd++k ePwdLp k  ++++++ew+fF+++d+ky++g+r nratk+gyWkatgkd++++s  +
  Achn274891 426 LPVGYRFRPTDEELINHYLRSKINGDEDAV-SVILEVDVCKQEPWDLPdKsLIETNDDEWFFFCPKDRKYQNGQRLNRATKRGYWKATGKDRTIKSVrG 523
                 799************************888.99**************96346777889************************************99857 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++++g+kktLvfy+grapkg++t+Wv+heyr+
  Achn274891 524 TKVIGMKKTLVFYSGRAPKGNRTNWVIHEYRA 555
                 788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562195.23E-16144289IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033728.0E-5152332IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF474731.02E-8312382IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.103.6E-7313373IPR011992EF-hand domain pair
PROSITE profilePS5022210.999346381IPR002048EF-hand domain
PROSITE patternPS000180359371IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF1019414.18E-59417578IPR003441NAC domain
PROSITE profilePS5100556.938426578IPR003441NAC domain
PfamPF023653.8E-27427554IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MEVCFEYGYG GDPEPLPSLV SRKIREAETE YKSRKGQNCV DNPVLRGCTD YWSVQGLIGM  60
SLIITGLYSF LWGMSKESRE PPISKAVVGE ASKVIAESVT TQSTAVVLSI ASLSDNGYGD  120
LDSQSQREEF WVGNEELVNM YERRLGDAGY MNFKLARTNN RGDGLLTAVH KDYFRVLNHR  180
ELLFNDFGDR VAQLLHVELV SPLSQCRSSN VRQEILIVNT HLLFPHDSSL CLVRLNQVYK  240
ILQYVESYQK ENKLNPLPII LCGDWNGSKR GHVYKFLRSQ GFVSSYDTAH QYKDADAQKY  300
LLRRASLTAD DAFAFLKADS LGDYITYSGF CEALRQLNLL GHCHGLSVEE TKELWVQADI  360
DGNGVLDYKE FQTHCGVLTS RNAMSFTDFL TNIGFQTSSA RFRGHIGEMN KEVWGAAMAV  420
LPLKSLPVGY RFRPTDEELI NHYLRSKING DEDAVSVILE VDVCKQEPWD LPDKSLIETN  480
DDEWFFFCPK DRKYQNGQRL NRATKRGYWK ATGKDRTIKS VRGTKVIGMK KTLVFYSGRA  540
PKGNRTNWVI HEYRATTEDL DGTKPGQGSF VICKLIRKHD EKVEEKQEEN TEASNCDEVE  600
QTVSSPGTVK SITEDMQSEP VTPLTSIQAE KLSPNSESCL AETSDTTFIA DDAGYPPDFE  660
LEEMLRQFCD PNQQAPDCDG KIFSPVHVQN LQMQMELGSS YDLHNSFAND MGNEHKGLQF  720
QHGTNEFGSY QNMAVEIDET NYLNIMSIFD KETGSCSESD ADVAQAQVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4342558114171Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.27e-80TCV-interacting protein