PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 484aa    MW: 55945.8 Da    PI: 7.7145
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.82.8e-1399171286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+ +evlaL+++r++me++l +       We+vs+k++  g++rs ++Ck+k+e+ ++    i+++  k       ++++f++le
  Achn274601  99 WSSDEVLALLRIRSSMENWLPDF-----TWEHVSRKLAGLGYRRSGEMCKDKFEEESRHLNTITTTYTK-------NYRFFSELE 171
                 ********************988.....9*************************998877777766665.......466666665 PP
2trihelix95.45.2e-30350439186
    trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+++evlaLi++r +++++++ ++     +k+plW+++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Achn274601 350 RWPRDEVLALINLRCSLNSNSGPNEekelgAKGPLWKRISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLS 439
                 8****************99999765556779********************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171995152IPR001005SANT/Myb domain
PfamPF138379.3E-1097172No hitNo description
PROSITE profilePS500906.2698150IPR017877Myb-like domain
SMARTSM007170.055347414IPR001005SANT/Myb domain
CDDcd122032.33E-22349419No hitNo description
PfamPF138371.1E-18349439No hitNo description
PROSITE profilePS500906.69350412IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MFDGIPEQFH QFIASSRTSV HPLSLSFPLH GSTTQTFPSF DPFPSSHHQP LQLQPHLLPQ  60
LHHPPTHHKQ EEEREANSFL STSLELERER SVAGPIDPWS SDEVLALLRI RSSMENWLPD  120
FTWEHVSRKL AGLGYRRSGE MCKDKFEEES RHLNTITTTY TKNYRFFSEL EEVCHGENSH  180
VLAQKNPNVE NLPRDEADKI GKQVSLEKQD SRNETVNEKM SKGKKRKRGG HHRRFEMLKG  240
FCQEIVNKMM AQQEEMHNKI IEDMVKRDEE KIAREEAWKK QETERINKEI EIRACEQAIS  300
GDRQTKLIEY LKHFTSLATS PIENPRSSNT QKTPPSPNSE KNEREDIGKR WPRDEVLALI  360
NLRCSLNSNS GPNEEKELGA KGPLWKRISQ GMLELGYKRS AKRCKEKWEN INKYFRKTKD  420
VNKKRSIDSR TCPYFHQLST LYSQGALVGP LDGPENRSAT PENRLENANA EVGEVHPALD  480
FEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228GKKRKRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4663213e-38AM466321.1 Vitis vinifera contig VV78X023223.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091610.10.0trihelix transcription factor GTL2
SwissprotQ8H1813e-95GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A2R6QLD80.0A0A2R6QLD8_ACTCH; Trihelix transcription factor
STRINGXP_004495792.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-95Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]