PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 350aa    MW: 39708.3 Da    PI: 7.2058
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.39.7e-1957127271
    trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 W  +e+++L+ +rre++ ++++ +k++k+lW+++s+ mr rg er+p +C +kw+nl k ykk  +++++ 
  Achn274261  57 WDLDEIQCLLSLRRELHCQFNTtNKSNKHLWDRISRGMRGRGWERTPSMCIDKWRNLLKGYKKAMNQNGGS 127
                 9********************746899************************************99999873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.32949114IPR017877Myb-like domain
PfamPF138375.2E-1555136No hitNo description
CDDcd122031.34E-1756120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPQNNSGTFN ASNASPLINL LNERMTNMLI ESEPNSESVP QPISPSENGS KRRAQTWDLD  60
EIQCLLSLRR ELHCQFNTTN KSNKHLWDRI SRGMRGRGWE RTPSMCIDKW RNLLKGYKKA  120
MNQNGGSGEV SYEELKEYCR DKKSNGSSKK SRADASDRMV DKDNGKPLNS EKSPNHDASP  180
VDIPEHEGLD PNEIPSWIWE GTPKWDGENP ASGGRIISVR WGENVKKIGI NGSAEGIQEA  240
IKSAFSLRTK RLFWLEDEDG IVQTLDRNMP LGYYTLHVDD GISVRICIYD GPNHNQCRTV  300
EKTFYTEDAF YDYLSRRGWI GLRDSSKNID SIENLHPGKL YHGLTMQKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-2151137186DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118516.11e-132trihelix transcription factor GT-4-like
TrEMBLA0A2R6PDM90.0A0A2R6PDM9_ACTCH; Trihelix transcription factor GT-4 like
STRINGVIT_01s0010g02420.t018e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.11e-85Trihelix family protein