PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn273391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 733aa    MW: 81078.3 Da    PI: 7.5498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn273391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000173553743655
                 S-STCHHHHHHHHHHHHHHH CS
         HLH  36 kKlsKaeiLekAveYIksLq 55 
                 +  + ae+L +Av+YIk+Lq
  Achn273391 355 RQTNTAEMLDLAVDYIKDLQ 374
                 44899**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-5332380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.48E-4349378No hitNo description
SMARTSM001770.0018390570No hitNo description
Gene3DG3DSA:3.40.50.3007.7E-69399583IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141935.45400613No hitNo description
SuperFamilySSF525401.58E-56400571IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd018685.22E-121402566No hitNo description
SMARTSM001736.6E-27402568No hitNo description
TIGRFAMsTIGR002318.2E-35404561IPR005225Small GTP-binding protein domain
SMARTSM001757.3E-107405568No hitNo description
PRINTSPR004494.5E-39405426No hitNo description
PfamPF000711.3E-60406566IPR001806Small GTPase superfamily
SMARTSM001741.9E-11407564No hitNo description
SMARTSM001764.1E-6410608No hitNo description
PRINTSPR004494.5E-39428444No hitNo description
PRINTSPR004494.5E-39446468No hitNo description
PRINTSPR004494.5E-39508521No hitNo description
PRINTSPR004494.5E-39543565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MYGVGSSQAI SRDSNLLFSP SFKHSDGEFL KSRDFIDSDL YQNQHNQHIS GLMRYRSAPS  60
SFFASLIDGG GCDGFLNHHE PSIPESESVF TRFVSSNGSD DSEPHDLQFA VKHETPEQNQ  120
NQYSSSDSGH VIYRSSLDHG DLANRSDSVS DITSNGLFKV ENGSAMKNPV EGKNLIRQSS  180
SPAGIFSNLT VENGFAVMRD VGNFRVGNGT NGKASPTKRL NGHINFSSGP PSCSRFMPQI  240
DENGNESSSP ENRHLGSGNS TNGIYVPSSQ NNTGFTGLKR NRYGDQKFSG FNSFESQNWE  300
SRNYGTDLTH HLSLPKTSAE MAAVEKFLQF QQDSVPCKIR AKRGFATHPR SIAERQTNTA  360
EMLDLAVDYI KDLQKQVKRF DLTIVDRSEM SNLYGEFSQK IDYVFKIVLI GDSAVGKSQL  420
LTRFARNEFN LDSKATIGVE FQTKTLVIDH KTVKAQIWDT AGQERYRAVT SAYYRGSLGA  480
MIVYDITKRQ SFDHVARWLD ELRSHADKNI VIMLVGNKSD LGSLRAVPTD DAKEFAQREN  540
LFFMETSALE ATNVETAFLT ILTEIYRIIS KKALIANEES ESGGNSALLK GTKIVVPGQE  600
PPSRDNGMAA LACQQYSGWL KAKHALLHAT TRPFLLTCNS WGQWWFKSER HVAELQSTGS  660
PEGTIDYGML NPSTRLMSEK SRELLRVYSA RGSWRFTTGT GTFRLATTSV ARDTVSFAGL  720
VKGAFSLTPE AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fbl_B3e-863956147219Ras-related protein Rab-11A
5fbq_B3e-863956147219Ras-related protein Rab-11A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058918.11e-169transcription factor bHLH130-like
TrEMBLA0A2R6RAC90.0A0A2R6RAC9_ACTCH; Transcription factor bHLH130 like
STRINGLus100210231e-145(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-40bHLH family protein