PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn273381

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YB

Protein Properties

Length: 313aa MW: 34613.7 Da PI: 9.4799

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn273381	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.5	1.2e-55	135	230	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdr+lPianvsrimkk++Panakiskdaketvqecvsefi f+t+easdkcqrekrktingddllwa++tlGfedyv+plkvyl+++r++egek Achn273381 135 REQDRLLPIANVSRIMKKAMPANAKISKDAKETVQECVSEFIRFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVNPLKVYLQRFRDVEGEK 230 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.6E-51	130	239	IPR009072	Histone-fold
SuperFamily	SSF47113	9.94E-39	137	239	IPR009072	Histone-fold
Pfam	PF00808	3.9E-27	140	204	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.5E-18	168	186	No hit	No description
PRINTS	PR00615	7.5E-18	187	205	No hit	No description
PRINTS	PR00615	7.5E-18	206	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MHTYRRTTVQ NTPRVEVDFV IIALIQRTTP LTLLTPSQSL SLSFATQFRR HRRDSVFRSL 60 NFLLLDQFHR YRNYTILSSV EKQGTSNLFG TDNRELLQFR ELSAGFQKEL SMADSDNDSG 120 GGRGGHNANS ELSSREQDRL LPIANVSRIM KKAMPANAKI SKDAKETVQE CVSEFIRFIT 180 GEASDKCQRE KRKTINGDDL LWAMTTLGFE DYVNPLKVYL QRFRDVEGEK TAFAGRPGGE 240 REASSGGNGS VVNLRNSGGS FVEGGAYGRI PSNVMMMGGN HHPEHVYGSG TYEHLSNGGP 300 GNMGTGYPGS RS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	9e-44	132	225	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	9e-44	132	225	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM449502	6e-72	AM449502.2 Vitis vinifera contig VV78X221419.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003634760.1	9e-91	PREDICTED: nuclear transcription factor Y subunit B-3
TrEMBL	A0A2R6QD14	1e-145	A0A2R6QD14_ACTCH; Nuclear transcription factor Y subunit B-10 like
STRING	VIT_19s0015g00440.t01	3e-90	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-67	nuclear factor Y, subunit B3