PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn272711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 464aa    MW: 50522.2 Da    PI: 8.356
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn272711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.61.2e-16161249186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfe....rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +L+ea++e+  +l+rg+l++ +Weev++ ++erg +    ++ +qCk+k++nl+kr+k + ++++++   +ss++ +f+++e
  Achn272711 161 EWSDSAIETLLEAYTEKYLQLNRGNLRGRDWEEVAETVSERGDKqkacKNVEQCKNKIDNLKKRFKVELQRMNSG-GLTSSNWHWFKKIE 249
                 5*************************************76665411116789***************99999998.78999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-19159249No hitNo description
SuperFamilySSF536332.49E-40280441IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006969.1E-16281421IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.102.0E-48281441IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.49E-85282442No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MPILTEALRT VTSRVAVING KRTHRQTFNL LQSTIRHSPS NVVDLLFPVS GPKPLTLTLT  60
LTLLSLSLSL SMSSCNDDFP LINGTSPKRI DPAGNEDGIA DEVSRIAVFY SPTTPLADAV  120
DDSSNGKLTS HRHKKPKHGA SAAAADSSSS AAGDYRKDRE EWSDSAIETL LEAYTEKYLQ  180
LNRGNLRGRD WEEVAETVSE RGDKQKACKN VEQCKNKIDN LKKRFKVELQ RMNSGGLTSS  240
NWHWFKKIEG IAGNSGSMKS PSDEDKSGGG NSAYMLRQPK SMMATVMNAV LLQSAFEKQG  300
VQTRVQSAFP MPEVAEPYSR LRAIRHLEKG RVVIFGGIGA GTGNPLFTTD TAAALRASEM  360
NAEAVLKGTN VNGIYDCHSG NNYVMLDHIS FREAVSRVVT SMDMMAIQYC EENGIPVVVF  420
NLLEPGNISR ALCGDHVGTL IDQAGRQADA FRRYAGAILM SFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ybd_A2e-4225044161237Uridylate kinase
1ybd_B2e-4225044161237Uridylate kinase
1ybd_C2e-4225044161237Uridylate kinase
3nwy_A6e-42281441120279Uridylate kinase
3nwy_B6e-42281441120279Uridylate kinase
3nwy_C6e-42281441120279Uridylate kinase
3nwy_D6e-42281441120279Uridylate kinase
3nwy_E6e-42281441120279Uridylate kinase
3nwy_F6e-42281441120279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541056.11e-132PREDICTED: uridylate kinase
TrEMBLA0A2R6PW901e-136A0A2R6PW90_ACTCH; Uridylate kinase
STRINGVIT_13s0074g00240.t013e-96(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.12e-72Trihelix family protein