PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn270061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 121aa MW: 13326.3 Da PI: 9.831 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.7 | 5.4e-17 | 18 | 60 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+ien snrqvtfsk r+g++ K +EL++L +a+va+i+ s+ Achn270061 18 KKIENISNRQVTFSKCRAGLFEKVNELCILSGAQVAIIVKSHG 60 68*************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.077 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-23 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-23 | 11 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-16 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-18 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-16 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-16 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MNNEKVKTTQ GRQKIEIKKI ENISNRQVTF SKCRAGLFEK VNELCILSGA QVAIIVKSHG 60 RRTFAFGHPN VDPVIDHYLA GNNSAAAASQ PCDAGNHPSV QACIFLLIFF LDNVRQLFKQ 120 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061644.1 | 7e-37 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_028061661.1 | 7e-37 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-26 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2R6RC51 | 2e-52 | A0A2R6RC51_ACTCH; Agamous-like MADS-box protein | ||||
STRING | Migut.N01120.1.p | 4e-32 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-24 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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