PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn269971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 357aa    MW: 39680.2 Da    PI: 8.3242
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn269971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.5e-17275309135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C + kTp+WR gp g ktLCnaCG++y++ +l
  Achn269971 275 CSHCLVQKTPQWRTGPLGAKTLCNACGVRYQSGRL 309
                 *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-7822352IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.76E-12268325No hitNo description
PROSITE profilePS5011411.279269305IPR000679Zinc finger, GATA-type
SMARTSM004018.1E-14269323IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-13273306IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.45E-11274316No hitNo description
PROSITE patternPS003440275300IPR000679Zinc finger, GATA-type
PfamPF003207.7E-15275309IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCDGSGFNLW LIPWVDQGME CVEGALKSNF RPETTLKRTH QQVFLDNLWA ANGQNGVSGE  60
DFSVDDLLDL SKEGIEDGFL EAEAAEKEDI KPCSVSVSPY KQREKHMDEF YPTRRNVSVT  120
HDLGSVPRTD LRVSADDLAD LEWVSHFVDD SFSDYSLMYG KLTEKPAAYR SQSPEIPVPN  180
KPCFTTPVQT KARSKRARTG RRVWSLGSPS LTESSSSASS SSSTSSSSNP WFIYANPRSN  240
TAESLFGQPP ASKKRKRENS GGSPHHHQQH QARRCSHCLV QKTPQWRTGP LGAKTLCNAC  300
GVRYQSGRLL SEYRPACSPI FSSEIHSNYH RKVLEIRRKK EGEQGGLAPA PPVQNF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070084.11e-127GATA transcription factor 5-like
SwissprotQ9FH577e-70GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2R6RIQ11e-140A0A2R6RIQ1_ACTCH; GATA transcription factor
STRINGXP_008241780.11e-104(Prunus mume)
STRINGEMJ058951e-104(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-70GATA transcription factor 5