PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn269791

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 435aa MW: 47611.8 Da PI: 9.5347

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn269791	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.6	4.4e-20	17	106	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++ +lrrg l+ ++W++v++++ + g +++ qC++k+e+l++ry+ +k+++ + + s++ +fd+++ Achn269791 17 CWTQDETLALIEAYRDRWLALRRGYLRTADWDAVAEAVavrcPAAGAAKTSAQCRHKMEKLRQRYRTEKQRSLSFPGRFFSSWFFFDNMD 106 8*********************************9999999**************************99889999****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-20	16	108	No hit	No description
PROSITE profile	PS50090	6.377	18	78	IPR017877	Myb-like domain
SMART	SM00595	4.3E-6	25	113	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSTTPAEKPP RKFPAPCWTQ DETLALIEAY RDRWLALRRG YLRTADWDAV AEAVAVRCPA 60 AGAAKTSAQC RHKMEKLRQR YRTEKQRSLS FPGRFFSSWF FFDNMDSLGI GSTTAVGSNQ 120 ESANRTVDSI GGLLSIKGLS EHDLVDSVLR TKNSRPNIEG GVDLGSGFRG NQNLVTIGFR 180 AKNSGKMDGN SRVLNGNSSY VDEGSDDDVG DDTDFGGGFR DRNPIDGKLV PPLIRAKKLE 240 KIHGGFGSNF DSNHDDGDGG GDDDDGGFFV RNPIDPHLVP PGYRGKKFGK VDGKLNPNFV 300 CADGSYAVPT GFRTKGFGKN LGYSYPNLDS RFSNGFASGV GLGLGKKNGD RGVKRERGGI 360 GEMVSSIKLL GDGFVMMEKM KMEMAREIEK MRMEMEMKRN ELILESQRQI VDAFVTVLME 420 KKKKKASPTV LPES*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSTTPAEKPP RKFPAPCWTQ DETLALIEAY RDRWLALRRG YLRTADWDAV AEAVAVRCPA  60
AGAAKTSAQC RHKMEKLRQR YRTEKQRSLS FPGRFFSSWF FFDNMDSLGI GSTTAVGSNQ  120
ESANRTVDSI GGLLSIKGLS EHDLVDSVLR TKNSRPNIEG GVDLGSGFRG NQNLVTIGFR  180
AKNSGKMDGN SRVLNGNSSY VDEGSDDDVG DDTDFGGGFR DRNPIDGKLV PPLIRAKKLE  240
KIHGGFGSNF DSNHDDGDGG GDDDDGGFFV RNPIDPHLVP PGYRGKKFGK VDGKLNPNFV  300
CADGSYAVPT GFRTKGFGKN LGYSYPNLDS RFSNGFASGV GLGLGKKNGD RGVKRERGGI  360
GEMVSSIKLL GDGFVMMEKM KMEMAREIEK MRMEMEMKRN ELILESQRQI VDAFVTVLME  420
KKKKKASPTV LPES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028116102.1	0.0	protein FIP2-like
TrEMBL	A0A2R6QNT2	0.0	A0A2R6QNT2_ACTCH; Trihelix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-22	Trihelix family protein