PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn267831

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 577aa MW: 63261.6 Da PI: 6.7451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn267831	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	364	403	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Achn267831 364 RREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 403 9***************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.376	352	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0014	358	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-10	363	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-5	364	407	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.9E-11	365	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MDKDYFLNSG IPPPLHFDPS SITNWHSLSS TQELNCSPEQ TSDCFLFESA LSSMVSSPAV 60 SNSAISNEGF AIRELIGKLG NICSSSESHH LLATTAAYIG GGGRSTNTSC YSTPLNSPPK 120 LHFPIDHQVN DKMPNLGNSI PINPNLPAVS ADPGFAERAA KFSRFVSRSF NGRTSQSGSN 180 NIELPYRSSP LMNSVKLQRV SSSPSLKVDG SPMGTQENHN STQTQIEMRF TNVLETKFGK 240 ILVSNASDRT EFGGSNEGSS VCEQIPNWEI GLKTPCESNS RKRKAVSRGK SSVNTTNTKV 300 AEGEENLNAK RSKSTEANGS VNGSVKTDEE VKGGTSNGEG DEDQKQAKAN SKPPEPPKDY 360 IHVRREKIGE RMKLLQDLVP GCNKVTGKAL MLDEIINYVQ SLQRQVEAFQ PKTSLSHRLH 420 PLDSSAAAAF FGHQIPEIPQ VQTNLSNVSV DEFCQGLPQF PTLCEDDLQS IVEMGFGHNP 480 NRDAGFHSQK LPWSQISSTT QVAFVTLNRV IDMRFEIENS VSFVICLMSN LFYNKRVSLD 540 WRILENSRTI SNLFYHTIIV YDNALDRGWN GGQESK*

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MDKDYFLNSG IPPPLHFDPS SITNWHSLSS TQELNCSPEQ TSDCFLFESA LSSMVSSPAV  60
SNSAISNEGF AIRELIGKLG NICSSSESHH LLATTAAYIG GGGRSTNTSC YSTPLNSPPK  120
LHFPIDHQVN DKMPNLGNSI PINPNLPAVS ADPGFAERAA KFSRFVSRSF NGRTSQSGSN  180
NIELPYRSSP LMNSVKLQRV SSSPSLKVDG SPMGTQENHN STQTQIEMRF TNVLETKFGK  240
ILVSNASDRT EFGGSNEGSS VCEQIPNWEI GLKTPCESNS RKRKAVSRGK SSVNTTNTKV  300
AEGEENLNAK RSKSTEANGS VNGSVKTDEE VKGGTSNGEG DEDQKQAKAN SKPPEPPKDY  360
IHVRREKIGE RMKLLQDLVP GCNKVTGKAL MLDEIINYVQ SLQRQVEAFQ PKTSLSHRLH  420
PLDSSAAAAF FGHQIPEIPQ VQTNLSNVSV DEFCQGLPQF PTLCEDDLQS IVEMGFGHNP  480
NRDAGFHSQK LPWSQISSTT QVAFVTLNRV IDMRFEIENS VSFVICLMSN LFYNKRVSLD  540
WRILENSRTI SNLFYHTIIV YDNALDRGWN GGQESK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028057652.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A2R6PPI2	0.0	A0A2R6PPI2_ACTCH; Transcription factor bHLH78 like
STRING	EMJ02381	1e-146	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-44	bHLH family protein