PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn267491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 38222 Da PI: 7.2431 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ ++ g++R++k+c++rw +yl Achn267491 15 KGPWTPEEDQKLINYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ ++++++ G++ W++Ia +++ gRt++++k++w+++l Achn267491 68 RGNFSDEEEQTIINLHAIVGNK-WSAIATHLP-GRTDNEIKNFWNSHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.253 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.95E-13 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.321 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDRSPISNEN VGLKKGPWTP EEDQKLINYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPNIKRGN FSDEEEQTII NLHAIVGNKW SAIATHLPGR TDNEIKNFWN SHLRKKLLQM 120 GIDPVTHRPR TDLNLLANLP QLLAAATSLS NPIVNPWDNS LRFHTDATVQ LAKSHLLHNI 180 LQALSTSSAP PPTMEALNFL GSVPLVDQHQ LYEYLRGSSH LEDFGNRPIS LASNPSQIPF 240 GTCLNLHVHQ PSRNVQPMTN SKPFHGDNND NCNQFTFPAG NSLPALISIS PECSTVNQME 300 NKINPTEHIS NPSSTSTNFE AWEKLMEDEA GDSYWREIIE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003634006.1 | 1e-146 | PREDICTED: transcription factor MYB39 | ||||
Refseq | XP_028112713.1 | 1e-146 | transcription factor MYB53-like isoform X1 | ||||
TrEMBL | A0A2R6RQF7 | 0.0 | A0A2R6RQF7_ACTCH; Transcription factor like | ||||
STRING | VIT_16s0039g01710.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 2e-94 | myb domain protein 107 |