PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn266031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 25103.4 Da PI: 7.4606 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.9 | 3.6e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++Cv+apyfp +qp+kf+ vhk+FGasnv+k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++ +l +k+ Achn266031 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFETVHKVFGASNVSKILNDLSAAQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQIDLYNAKK 105 7*******************************************************************************************9998887 PP DUF260 100 e 100 e Achn266031 106 E 106 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.955 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-42 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSTTASPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFETVH KVFGASNVSK ILNDLSAAQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQIDL YNAKKELAAY IGPSAMFPIL 120 QTPNNPAFHA HQPSQQQILD AQQMAAVLAA REQQEVSRFN QMNAASLGLG SFDPIQQISP 180 QEQWHQIQIQ SEVLVQQQPA MGARQQERAG SRSEEGRGVV HRVDAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 5 | 110 | 9 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 5 | 110 | 9 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240569.1 | 1e-75 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 8e-68 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2R6PAI6 | 1e-164 | A0A2R6PAI6_ACTCH; LOB domain-containing protein | ||||
STRING | VIT_07s0197g00020.t01 | 6e-74 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-70 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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