PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn263121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 113aa MW: 12352.8 Da PI: 8.037

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn263121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46	1.8e-14	37	111	4	82
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 ++Y+ke GF v+k++s+k ++g + tf C+++gk++ ++++ + r++++t+Ckakl+ +++ dg+w v+++e Achn263121 37 KTYGKEKGFAVSKRSSTKG-DDGVVRYVTFACTRNGKSQIKSSN---PIKYRPVSKTNCKAKLRATLSVDGTWSVNSIE 111 58**********99987.9999***********99888...999***********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-12	37	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MEEEVSCAFG SIELNHENNG DTMEILTNEE DELGKPKTYG KEKGFAVSKR SSTKGDDGVV 60 RYVTFACTRN GKSQIKSSNP IKYRPVSKTN CKAKLRATLS VDGTWSVNSI EL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023872091.1	3e-26	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_023872092.1	3e-26	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2N9J8F9	4e-23	A0A2N9J8F9_FAGSY; Uncharacterized protein
STRING	XP_009364884.1	5e-22	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17402	2	4