PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn263121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 113aa MW: 12352.8 Da PI: 8.037 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46 | 1.8e-14 | 37 | 111 | 4 | 82 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 ++Y+ke GF v+k++s+k ++g + tf C+++gk++ ++++ + r++++t+Ckakl+ +++ dg+w v+++e Achn263121 37 KTYGKEKGFAVSKRSSTKG-DDGVVRYVTFACTRNGKSQIKSSN---PIKYRPVSKTNCKAKLRATLSVDGTWSVNSIE 111 58************99987.9999***************99888...999*************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-12 | 37 | 111 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MEEEVSCAFG SIELNHENNG DTMEILTNEE DELGKPKTYG KEKGFAVSKR SSTKGDDGVV 60 RYVTFACTRN GKSQIKSSNP IKYRPVSKTN CKAKLRATLS VDGTWSVNSI EL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023872091.1 | 3e-26 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_023872092.1 | 3e-26 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2N9J8F9 | 4e-23 | A0A2N9J8F9_FAGSY; Uncharacterized protein | ||||
STRING | XP_009364884.1 | 5e-22 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17402 | 2 | 4 |