PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn262881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 618aa    MW: 66625.8 Da    PI: 6.5155
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn262881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.9e-22130232199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k ltpsd+++ g +++pk +a++          ++ +   l ++d +g +We+++iyr++++r++lt+GW++ v+ ++L +gD+vvF +++ +++el
  Achn262881 130 FAKMLTPSDANNGGGFSVPKFCADSVfppldyaADPPVQ--NLLVMDVHGVVWEFRHIYRGTPSRHLLTTGWSKLVNHKKLVAGDSVVFCRNR-NSGEL 225
                 8899***************9999999*****97666666..6999*********************************************654.8999* PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  Achn262881 226 FVGVRRA 232
                 ****996 PP
2Auxin_resp77.92.6e-26330414183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdld.pvrWpnSkWrsLk 83 
                 aa+ a+ +++Fev+ +P++++++Fvvk+e ve++l+v +  GmR+kma+eted s+r++ +Gtv+ v   d ++ W++S Wr+L+
  Achn262881 330 AAELAARGMTFEVLCYPKVGWADFVVKAETVEESLNVLWNSGMRVKMAMETEDTSRRTWlQGTVSLVLVPDvNCPWRGSLWRMLQ 414
                 688999**********************************************************98876553569********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-27124234IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-32129236IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-20130231No hitNo description
PROSITE profilePS5086312.167130233IPR003340B3 DNA binding domain
PfamPF023622.6E-20130232IPR003340B3 DNA binding domain
SMARTSM010196.2E-19130233IPR003340B3 DNA binding domain
PfamPF065073.6E-23330414IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MSHSSLSPKT LPMDTTAELR QVDPTVWKAC AGSAFRIPAV DSRVYYFPQG HAEHSSSPPL  60
LSPLVTSQPL ILCRVAAVHL LANLETDEVF AKIRLVPTTD RSREVHALQR KGDSGGGEVE  120
EDGGDAVVTF AKMLTPSDAN NGGGFSVPKF CADSVFPPLD YAADPPVQNL LVMDVHGVVW  180
EFRHIYRGTP SRHLLTTGWS KLVNHKKLVA GDSVVFCRNR NSGELFVGVR RAVRSSVDCG  240
GRWNFHAGSV RVEEEGGGGD SGGGGGGKEG VGSVRVEAAV GGGGKEGAGS MRVKAVEEGG  300
GGDGGGGGGG GGKEEFWRSG RVSAESVVEA AELAARGMTF EVLCYPKVGW ADFVVKAETV  360
EESLNVLWNS GMRVKMAMET EDTSRRTWLQ GTVSLVLVPD VNCPWRGSLW RMLQVTWDEP  420
EDRQSVKRVS PWQVKYDVPT PLLHSTYPPA KKLRIPQNPE LPTDGDGDLF FPIKGLSHSI  480
MGQLNPSLMN YISFPAGMQG ARQDPFGVSS LSNFTSENTH YMTPKLENFY PELNIVSSQS  540
ENWSPDSQNS VHFLGNELTA KQGYNSTKVG LDTIRLFGKT IRTKHLVESH YGDGRTKDNG  600
TEGNSGSVFD SLSPKTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A7e-472623823231Auxin response factor 1
4ldy_B7e-472623823231Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091086.10.0auxin response factor 17 isoform X1
RefseqXP_028091087.10.0auxin response factor 17 isoform X2
TrEMBLA0A2R6QYQ60.0A0A2R6QYQ6_ACTCH; Auxin response factor
STRINGcassava4.1_004122m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-70auxin response factor 17