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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn261561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | RAV | ||||||||
Protein Properties | Length: 303aa MW: 34460.2 Da PI: 8.4478 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.7 | 6.6e-09 | 30 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV + +g W A+I+ + +r++lg+f ++ eAa ++ a +kl+ Achn261561 30 KFKGVVPQP-NGHWGAQIYA------NhRRIWLGTFKSEIEAAMVYDSASLKLRT 77 799998777.8******999......44**********99**********99985 PP | |||||||
2 | B3 | 83.1 | 2.7e-26 | 150 | 247 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ltpsdv+k++rlv+pkk+a ++ + k ++ l ++d+ r W+++++y+k+s+++v+t+GW++Fvk++gLke+D++ F++ + Achn261561 150 FQKELTPSDVGKLNRLVVPKKYAVKYfpvvpestegntDDGKVDEVHLFFYDRMMRLWKFRYCYWKSSQSFVFTRGWNRFVKEKGLKENDIIAFYVCE 247 99****************************99999888444458899************************************************653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.53E-20 | 29 | 87 | No hit | No description |
PROSITE profile | PS51032 | 16.371 | 30 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-14 | 30 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-15 | 30 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-4 | 30 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-13 | 30 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-30 | 147 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.68E-27 | 148 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.87E-23 | 149 | 244 | No hit | No description |
Pfam | PF02362 | 9.4E-24 | 150 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-19 | 150 | 254 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.956 | 150 | 267 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MIEDVKTHVI AEGSVSSSPC QPSNAAMPAK FKGVVPQPNG HWGAQIYANH RRIWLGTFKS 60 EIEAAMVYDS ASLKLRTGDN YRNFPWTNVT VHEPKFQSLH STEAILNMIR DGSYSSKFAD 120 FLGSQKGEQE LSVNLITVHG HGGFSFKLLF QKELTPSDVG KLNRLVVPKK YAVKYFPVVP 180 ESTEGNTDDG KVDEVHLFFY DRMMRLWKFR YCYWKSSQSF VFTRGWNRFV KEKGLKENDI 240 IAFYVCEGRE RAKEGHSFCL IDVVYPEGST NSRVDEGTSQ NVDMQVDLRL MLGQNLNCWL 300 VK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-27 | 149 | 251 | 13 | 108 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093432.1 | 1e-163 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C688 | 1e-98 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A2R6REH6 | 0.0 | A0A2R6REH6_ACTCH; AP2/ERF and B3 domain-containing transcription factor | ||||
STRING | VIT_11s0037g00010.t01 | 1e-126 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-101 | RAV family protein |