PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn260421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GATA | ||||||||
Protein Properties | Length: 160aa MW: 17781.7 Da PI: 10.4875 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.3 | 1.2e-19 | 34 | 67 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG++yrk++ Achn260421 34 CADCKTTKTPLWRVGPAGPKSLCNACGIRYRKRR 67 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.2E-14 | 28 | 84 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-13 | 30 | 67 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-15 | 32 | 67 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.6E-17 | 34 | 67 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.334 | 34 | 64 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.63E-14 | 34 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MLKVTQFSIE GFIGHFDHLW ESVCEEMNEV KKCCADCKTT KTPLWRVGPA GPKSLCNACG 60 IRYRKRRNAM LGLNRGSEKR KEKPATTTPT QKISTGGSGK GGNLSEDLRV KLMDLGKEMV 120 RLQRQRSPMK RRKTNSRNLG EEEQAAFLLM ALSCGSVFA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028086304.1 | 4e-60 | GATA transcription factor 16-like | ||||
TrEMBL | A0A2R6Q751 | 5e-91 | A0A2R6Q751_ACTCH; GATA transcription factor | ||||
STRING | VIT_14s0060g01520.t01 | 1e-46 | (Vitis vinifera) | ||||
STRING | PGSC0003DMT400063771 | 2e-46 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-23 | GATA transcription factor 15 |