PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn257441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 713aa    MW: 78138.6 Da    PI: 5.7728
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn257441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-1955110156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r++ +++t++q++e+e++F+++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  Achn257441  55 RKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLALEPLQVKFWFQNKRTQMK 110
                 789999***********************************************998 PP
2START224.72.8e-702404601206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a ++ep+W +s+    e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW + +     +a t+ev+s
  Achn257441 240 ELAVAAMEELIRMAHSGEPLWLSSPdnstEALSEEEYFRTFPRGIGptplgLKSEASRESAVVIMNHMNLVEILMDVN-QWANVFSgivsRAVTIEVLS 337
                 57899********************99999999**********999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skv+wvehv++++r +h
  Achn257441 338 TGvagnynGALQVMTAEYQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPST----VSRCRRRPSGCLIQEVPNGYSKVIWVEHVEVDDRAVH 432
                 ********************************************************87....8************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r+lv+sgla+gak+wvatl+rqce+
  Achn257441 433 SIYRPLVNSGLAFGAKRWVATLDRQCER 460
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-2137110IPR009057Homeodomain-like
SuperFamilySSF466892.91E-1838111IPR009057Homeodomain-like
PROSITE profilePS5007116.30952112IPR001356Homeobox domain
SMARTSM003891.7E-1553116IPR001356Homeobox domain
CDDcd000861.29E-1654113No hitNo description
PfamPF000461.5E-1655110IPR001356Homeobox domain
PROSITE profilePS5084846.607231463IPR002913START domain
SuperFamilySSF559617.94E-37231462No hitNo description
CDDcd088755.26E-128235459No hitNo description
SMARTSM002346.1E-71240460IPR002913START domain
PfamPF018524.8E-59241460IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-6327460IPR023393START-like domain
SuperFamilySSF559616.72E-26475704No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MFESHQLVDM SHKTAESEME MMMRGEDEFE SKSGTDIMEA PSGEDDPDPA QRAKRKRYHR  60
HTQHQIQEME SFFKECPHPD DKQRKELGRR LALEPLQVKF WFQNKRTQMK AKHERCENTQ  120
LRNENDKLRE QNIRYKEALS NATCPNCGGP AAIGEMSFDE QHLRIENARL SEEIDRISGI  180
AAKYVGKPLL TYPNGPARSI NIGVGNFGLQ SALVGDFYGP GDLLRSVSGP TEADKPMIIE  240
LAVAAMEELI RMAHSGEPLW LSSPDNSTEA LSEEEYFRTF PRGIGPTPLG LKSEASRESA  300
VVIMNHMNLV EILMDVNQWA NVFSGIVSRA VTIEVLSTGV AGNYNGALQV MTAEYQVPSP  360
LVPTRENYFV RYCKQHTDGT WAVVDVSLDN LRPSTVSRCR RRPSGCLIQE VPNGYSKVIW  420
VEHVEVDDRA VHSIYRPLVN SGLAFGAKRW VATLDRQCER IASAMANTIP ADVGDGKKSM  480
LKLAERMVMS FCTGVGASTA HAWTTLSGSG ADDVRVMTRK SMDDPGRPPG IVLSAATSFW  540
LPVPPKRVFD FLRNENLRSE WDILSNGGLV QEMAHIANGR DPGNSISLLR VNSANSSQSN  600
MLILQESCTD STGTYVIYAP VDIVAMNVVL SGGDPDYVAL LPSGFAILPD GPTQHGAVIP  660
DGSGGSLLTV AFQIIVDSVP TAKLSLGSVA TVNSLIKCTV ERIKSAVGGE NA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124330.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124331.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124332.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124333.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124334.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124335.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2R6PXF20.0A0A2R6PXF2_ACTCH; Homeobox-leucine zipper protein PROTODERMAL FACTOR like
STRINGXP_009799795.10.0(Nicotiana sylvestris)
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]