PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn253671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 472aa    MW: 48691.1 Da    PI: 8.6423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn253671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-221759345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 en+sn qvtfskRr g++KKA+ELS+LC+aeva+i+fs+  k
  Achn253671 17 MENESNLQVTFSKRRSGLFKKASELSILCGAEVAIIVFSPGSK 59
                79*************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-30766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.866767IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-26878IPR002100Transcription factor, MADS-box
CDDcd002656.94E-35879No hitNo description
PRINTSPR004042.9E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAERKTRGRQ RVAMAKMENE SNLQVTFSKR RSGLFKKASE LSILCGAEVA IIVFSPGSKA  60
FSFGHPSVDA VIDRFLTGNQ VPPNVTNQLV EAQRNAAVSE MNVRLMQVQE MLEAERKRGA  120
ELDQERAVSR SQRPWEAPID ELGLEQLEQL KAAMENLRDN VALHVEKLMQ EEQQAAEAAE  180
NPSAGPGGFG GGDGGLPFME GRSSASGAPS LFQAGPSSVS GVGSRSAFTF QAGPSSFGRV  240
GDFAYVPGPS SVGANTGSRE GTRSVECSKS VSLPFGGPSS FVAGTSSGTG TGPLLYQPGP  300
SFYVGTSISG PSPYQPGPST LVVGSSGDTA TFPYHGDLSS FVFGSFVGAS GSGPSPFVAA  360
GTNSTAALPY SARPSFFVGG TGTSVGVLPY QEGPSSSNIA GPRTYASVLA FPPFPADPSS  420
FRGRASIPLP VGRGRAGPSD AHDGPPDART PQPGGSSVPR GPNRGRGRGF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-14892186Myocyte-specific enhancer factor 2A
3kov_B1e-14892186Myocyte-specific enhancer factor 2A
3kov_I1e-14892186Myocyte-specific enhancer factor 2A
3kov_J1e-14892186Myocyte-specific enhancer factor 2A
3p57_A1e-14892186Myocyte-specific enhancer factor 2A
3p57_B1e-14892186Myocyte-specific enhancer factor 2A
3p57_C1e-14892186Myocyte-specific enhancer factor 2A
3p57_D1e-14892186Myocyte-specific enhancer factor 2A
3p57_I1e-14892186Myocyte-specific enhancer factor 2A
3p57_J1e-14892186Myocyte-specific enhancer factor 2A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PAC90.0A0A2R6PAC9_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-57AGAMOUS-like 62