PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn253001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 948aa MW: 105865 Da PI: 6.3164 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 160.1 | 4.2e-50 | 11 | 124 | 3 | 116 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e ++rwlk+ e++ iLen+++ +lt+el+++p sgsl+L+n++++r+frkDG++w+kkkdg+t E+he+LKvg++++l+cyYa++e+np+fqrr+yw Achn253001 11 REtQTRWLKPAEVLFILENYKEDQLTHELPKKPASGSLFLFNKRVLRFFRKDGHNWRKKKDGRT-GEAHERLKVGNTKALNCYYARGEQNPNFQRRSYW 108 5559***********************************************************7.8********************************* PP CG-1 101 lLeeelekivlvhyle 116 +L+ e+e+ivlvhy++ Achn253001 109 MLDPEYEHIVLVHYRD 124 **************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 70.401 | 6 | 131 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.0E-64 | 9 | 126 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.3E-45 | 13 | 124 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.5E-8 | 392 | 482 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 1.75E-4 | 394 | 479 | No hit | No description |
SuperFamily | SSF81296 | 6.3E-17 | 394 | 478 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.6E-6 | 394 | 477 | IPR002909 | IPT domain |
PROSITE profile | PS50297 | 17.343 | 591 | 683 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.8E-15 | 593 | 684 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 9.95E-16 | 595 | 686 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.43E-14 | 596 | 683 | No hit | No description |
Pfam | PF12796 | 4.0E-8 | 606 | 684 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.82 | 624 | 656 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0022 | 624 | 653 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 680 | 663 | 692 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 340 | 741 | 763 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.833 | 742 | 771 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.09E-5 | 803 | 856 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.94 | 804 | 826 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.968 | 806 | 834 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0033 | 807 | 825 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 9.6E-4 | 827 | 849 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.865 | 830 | 856 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-5 | 831 | 849 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 948 aa Download sequence Send to blast |
MASYNIDDLV RETQTRWLKP AEVLFILENY KEDQLTHELP KKPASGSLFL FNKRVLRFFR 60 KDGHNWRKKK DGRTGEAHER LKVGNTKALN CYYARGEQNP NFQRRSYWML DPEYEHIVLV 120 HYRDISEGRH SSGSISLLST VSTSTFHRSP SSYAPQYPGS TAIISELSKP RQSPGSVEDR 180 LDSSDAVIKS NGMHHLDRCE SMGEIGSSYL FEGSQALQRL EEQLSLNDDN LENIHPFWSG 240 NDNSNDSDFI INDQHDLNNL VLQRESVDTG KNNHQALAQE ITVEHKDSLC SKEILDFCKS 300 STVAEFEERK LHTLDGNESC SDNPSMFDNP LELPVSMSLP QEVENFNFPA CSPVTMFRHT 360 DHPDYLTTLF DQGQIGLDLK TDSRLTIAQK QKFTVREISP EWGYAYEATK VVIVGSFPCD 420 PSEVAWTCMF GDIEVPVQII QEGVICCLAP PCSPGKVTLC ITSGNRESCS EDRVFEYRDS 480 PSCGHCSSSQ AETTKSREEL LLLARFVRML LSDPSVQNGD ITESVTDPFG QFKAGEDSWG 540 HVINALLDCS CTLSGTTDWL LQELLKDKLQ QWLSSRSQGT YNRQGSSLSR KAQGVIHIVA 600 GLGFEWALNP ILDSGVSINF RDINGWSALH WAARFGREKM VAALIASGAS AGAVTDPNPQ 660 DPTGKTPAYI AATSGHKGLA GYLSEVALTT HLSSLTLEEN EKSKGLADVE AENAVNSISQ 720 RSLTTNEDEV SLKDTLAAVR NAAQAASRIQ AAFRERSFRR RQQREAAAAA AAAAAGSEYE 780 YNILANDITG LSAASKLAFG NARDCNKAAL AIQKKYRGWK GRKNYIAILQ KVVKIQAHVR 840 GYQARKQYKI ICWAVSVLEK VILRWRRKGV GLRGFRPEME PIDESEDEDI LKLFRKQNVD 900 TAINEAVSRV LSMVDSLEAR QQYHRLLERY RQVKDELKGP EITSMSQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051249.1 | 0.0 | calmodulin-binding transcription activator 4-like | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A2R6REZ5 | 0.0 | A0A2R6REZ5_ACTCH; Calmodulin-binding transcription activator like | ||||
STRING | VIT_01s0010g03850.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3932 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
---|---|---|---|
|