PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn253001

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 948aa MW: 105865 Da PI: 6.3164

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn253001	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.1	4.2e-50	11	124	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e ++rwlk+ e++ iLen+++ +lt+el+++p sgsl+L+n++++r+frkDG++w+kkkdg+t E+he+LKvg++++l+cyYa++e+np+fqrr+yw Achn253001 11 REtQTRWLKPAEVLFILENYKEDQLTHELPKKPASGSLFLFNKRVLRFFRKDGHNWRKKKDGRT-GEAHERLKVGNTKALNCYYARGEQNPNFQRRSYW 108 5559*********************************************************7.8***************************** PP CG-1 101 lLeeelekivlvhyle 116 +L+ e+e+ivlvhy++ Achn253001 109 MLDPEYEHIVLVHYRD 124 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.401	6	131	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.0E-64	9	126	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.3E-45	13	124	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.5E-8	392	482	IPR013783	Immunoglobulin-like fold
CDD	cd00102	1.75E-4	394	479	No hit	No description
SuperFamily	SSF81296	6.3E-17	394	478	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.6E-6	394	477	IPR002909	IPT domain
PROSITE profile	PS50297	17.343	591	683	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.8E-15	593	684	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.95E-16	595	686	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.43E-14	596	683	No hit	No description
Pfam	PF12796	4.0E-8	606	684	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.82	624	656	IPR002110	Ankyrin repeat
SMART	SM00248	0.0022	624	653	IPR002110	Ankyrin repeat
SMART	SM00248	680	663	692	IPR002110	Ankyrin repeat
SMART	SM00015	340	741	763	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.833	742	771	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.09E-5	803	856	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.94	804	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.968	806	834	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0033	807	825	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9.6E-4	827	849	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.865	830	856	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-5	831	849	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MASYNIDDLV RETQTRWLKP AEVLFILENY KEDQLTHELP KKPASGSLFL FNKRVLRFFR 60 KDGHNWRKKK DGRTGEAHER LKVGNTKALN CYYARGEQNP NFQRRSYWML DPEYEHIVLV 120 HYRDISEGRH SSGSISLLST VSTSTFHRSP SSYAPQYPGS TAIISELSKP RQSPGSVEDR 180 LDSSDAVIKS NGMHHLDRCE SMGEIGSSYL FEGSQALQRL EEQLSLNDDN LENIHPFWSG 240 NDNSNDSDFI INDQHDLNNL VLQRESVDTG KNNHQALAQE ITVEHKDSLC SKEILDFCKS 300 STVAEFEERK LHTLDGNESC SDNPSMFDNP LELPVSMSLP QEVENFNFPA CSPVTMFRHT 360 DHPDYLTTLF DQGQIGLDLK TDSRLTIAQK QKFTVREISP EWGYAYEATK VVIVGSFPCD 420 PSEVAWTCMF GDIEVPVQII QEGVICCLAP PCSPGKVTLC ITSGNRESCS EDRVFEYRDS 480 PSCGHCSSSQ AETTKSREEL LLLARFVRML LSDPSVQNGD ITESVTDPFG QFKAGEDSWG 540 HVINALLDCS CTLSGTTDWL LQELLKDKLQ QWLSSRSQGT YNRQGSSLSR KAQGVIHIVA 600 GLGFEWALNP ILDSGVSINF RDINGWSALH WAARFGREKM VAALIASGAS AGAVTDPNPQ 660 DPTGKTPAYI AATSGHKGLA GYLSEVALTT HLSSLTLEEN EKSKGLADVE AENAVNSISQ 720 RSLTTNEDEV SLKDTLAAVR NAAQAASRIQ AAFRERSFRR RQQREAAAAA AAAAAGSEYE 780 YNILANDITG LSAASKLAFG NARDCNKAAL AIQKKYRGWK GRKNYIAILQ KVVKIQAHVR 840 GYQARKQYKI ICWAVSVLEK VILRWRRKGV GLRGFRPEME PIDESEDEDI LKLFRKQNVD 900 TAINEAVSRV LSMVDSLEAR QQYHRLLERY RQVKDELKGP EITSMSQ*

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MASYNIDDLV RETQTRWLKP AEVLFILENY KEDQLTHELP KKPASGSLFL FNKRVLRFFR  60
KDGHNWRKKK DGRTGEAHER LKVGNTKALN CYYARGEQNP NFQRRSYWML DPEYEHIVLV  120
HYRDISEGRH SSGSISLLST VSTSTFHRSP SSYAPQYPGS TAIISELSKP RQSPGSVEDR  180
LDSSDAVIKS NGMHHLDRCE SMGEIGSSYL FEGSQALQRL EEQLSLNDDN LENIHPFWSG  240
NDNSNDSDFI INDQHDLNNL VLQRESVDTG KNNHQALAQE ITVEHKDSLC SKEILDFCKS  300
STVAEFEERK LHTLDGNESC SDNPSMFDNP LELPVSMSLP QEVENFNFPA CSPVTMFRHT  360
DHPDYLTTLF DQGQIGLDLK TDSRLTIAQK QKFTVREISP EWGYAYEATK VVIVGSFPCD  420
PSEVAWTCMF GDIEVPVQII QEGVICCLAP PCSPGKVTLC ITSGNRESCS EDRVFEYRDS  480
PSCGHCSSSQ AETTKSREEL LLLARFVRML LSDPSVQNGD ITESVTDPFG QFKAGEDSWG  540
HVINALLDCS CTLSGTTDWL LQELLKDKLQ QWLSSRSQGT YNRQGSSLSR KAQGVIHIVA  600
GLGFEWALNP ILDSGVSINF RDINGWSALH WAARFGREKM VAALIASGAS AGAVTDPNPQ  660
DPTGKTPAYI AATSGHKGLA GYLSEVALTT HLSSLTLEEN EKSKGLADVE AENAVNSISQ  720
RSLTTNEDEV SLKDTLAAVR NAAQAASRIQ AAFRERSFRR RQQREAAAAA AAAAAGSEYE  780
YNILANDITG LSAASKLAFG NARDCNKAAL AIQKKYRGWK GRKNYIAILQ KVVKIQAHVR  840
GYQARKQYKI ICWAVSVLEK VILRWRRKGV GLRGFRPEME PIDESEDEDI LKLFRKQNVD  900
TAINEAVSRV LSMVDSLEAR QQYHRLLERY RQVKDELKGP EITSMSQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051249.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2R6REZ5	0.0	A0A2R6REZ5_ACTCH; Calmodulin-binding transcription activator like
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]