PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn251071

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 318aa MW: 35439.3 Da PI: 6.3792

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn251071	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.8	2.8e-09	125	173	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A+rs +RK ++ eLe+kv +L++e ++L +l + Achn251071 125 KRAKRILANRQSASRSKERKARYMSELERKVLTLQTEATTLSAQLTLFQ 173 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-15	121	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	123	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.65E-10	125	176	No hit	No description
Pfam	PF00170	7.8E-8	125	173	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.2E-8	125	179	No hit	No description
CDD	cd14703	1.34E-20	126	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTSATTSFGN VFRSGQHRRA HSEVNFRLPE DLDLASDPFD GPSSGSFDEI GSEDDLFCTY 60 MDMERLGSGG GDGVAAESSE REKRERPRHR HSNSVDGSIL LSESIEAKKA MAPDKLAELW 120 TIDPKRAKRI LANRQSASRS KERKARYMSE LERKVLTLQT EATTLSAQLT LFQRDTTGLS 180 NENTELKLRL QAMEQQAHLR DALNEALKQE VERLIIATGE LTSPSDSCNF GMQYLPYTQS 240 SFYSQQPQQG RTDPHHTQMP QFHPLQSNML NHHHSLLVAS QSQVLPEMQG LDINARGSHF 300 VKSEGPSISA SESSSRF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028084122.1	1e-152	transcription factor RF2b-like
Refseq	XP_028124385.1	1e-152	transcription factor RF2b-like
Swissprot	O22873	1e-102	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2R6RWM0	0.0	A0A2R6RWM0_ACTCH; Transcription factor RF2b like
STRING	VIT_13s0067g02900.t01	1e-147	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	3e-95	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]