PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn250031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 993aa MW: 113200 Da PI: 6.1245 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.8 | 1.2e-25 | 187 | 273 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA vGFsvrk+ ++sk +g++++r+f+Cskeg+r+++k++ + +++r+etrtgC a++ ++++ dgk+++t++e++HnHe Achn250031 187 RFYSKYAGLVGFSVRKDWVNRSKVHGRVVSRKFTCSKEGHRRKDKRD-INVKKHRKETRTGCLAHMIITRQPDGKYRITHFEENHNHE 273 5*******************************************999.99999**********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47699 | 3.54E-11 | 33 | 98 | IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain |
CDD | cd04660 | 1.73E-16 | 37 | 97 | No hit | No description |
SMART | SM00499 | 1.5E-6 | 37 | 97 | IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain |
Pfam | PF03101 | 8.1E-23 | 187 | 273 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.9E-26 | 401 | 494 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 5.6E-5 | 681 | 717 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.534 | 681 | 717 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-7 | 692 | 719 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 993 aa Download sequence Send to blast |
MAATKSIVSL CTRAMLAFVL ITLVVQTQVA QLRAQTCSDE LGNLNMCAPF VVPGAGSTSP 60 GSDCCSALQA VDHNCFCSTL RIAAQIPSKC NLPPLSCGET SEVLREVALV REMDRSDDDL 120 VSSHEDDTDT RLQTSNNLDL NIEQDCRSPK VAHVRSLQSI LSSKDESNSK VVLKVGMEFE 180 SDEFAYRFYS KYAGLVGFSV RKDWVNRSKV HGRVVSRKFT CSKEGHRRKD KRDINVKKHR 240 KETRTGCLAH MIITRQPDGK YRITHFEENH NHENVNPGNA QNLQELPLQQ GTVDGTGVTE 300 ADSSSNLEKQ SKLALQLLGR RFGTVENIDY PAIDFGNYLK SGRARDLKEG EAGRLMYYFQ 360 RQHYENPSFF HAIQLDVDDK ISNIFWADDN MILDYDHFGD VVCLDTAYRT NKDFRPFVQF 420 LGLNHHRQVL IFGAALMYDE TIDSFKWLFR TFIEAMSGKK PKAILTFQDA TIIQAIDSVL 480 PETNHRVCIW QMYQDALEHL SHVTKDADSF AKDLRSCIFY HEDEEDFINA WDAMIDKFTL 540 QQNDWLRWMF REKEKWALVY GKNTFFIDMK SAHLGEDLSN NLREYLNTDV DVLQFFMRFE 600 SMVNEQRFKE LEANYDMGRC TPRLMANVIL LKHASDLYTP KAFEVFQREY EKCLNVVVKL 660 CIGNGSLFEY KANTFGKPSE YTVTYNSSDD TVTCSCMKFE YVGVLCCHAL KVLDHRNIKV 720 LPACYILKRW TRDARVESLG ESFGTSLEEN PKLITASRYR KLCQRILKIS ARAADSDQAF 780 EYAAKRLDEV MQGVEKILTL KPTEETQALT SSSTGAYASE SEHTEIFLDR NAIEGQDDSH 840 TFMQENEREI MGKDPLNNLG EKISKTKRSQ NVHPPPPDTV TSNSISCPPP AYVSSVSSSL 900 THVSQDFYNF GANFQCLYQP PNLSMDQQPS PDIYQPLSLF SNQHDSPSQG QLLQESLIRC 960 PFQESMLQRN QLRQAMDLDV QHPHSTSFIR FD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122242.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
TrEMBL | A0A2R6RQU3 | 0.0 | A0A2R6RQU3_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | EOY23112 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-112 | FAR1-related sequence 5 |