PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn250031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 993aa MW: 113200 Da PI: 6.1245

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn250031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.8	1.2e-25	187	273	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA vGFsvrk+ ++sk +g++++r+f+Cskeg+r+++k++ + +++r+etrtgC a++ ++++ dgk+++t++e++HnHe Achn250031 187 RFYSKYAGLVGFSVRKDWVNRSKVHGRVVSRKFTCSKEGHRRKDKRD-INVKKHRKETRTGCLAHMIITRQPDGKYRITHFEENHNHE 273 5*****************************************999.99999********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47699	3.54E-11	33	98	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDD	cd04660	1.73E-16	37	97	No hit	No description
SMART	SM00499	1.5E-6	37	97	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Pfam	PF03101	8.1E-23	187	273	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-26	401	494	IPR018289	MULE transposase domain
Pfam	PF04434	5.6E-5	681	717	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.534	681	717	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-7	692	719	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 993 aa Download sequence Send to blast
MAATKSIVSL CTRAMLAFVL ITLVVQTQVA QLRAQTCSDE LGNLNMCAPF VVPGAGSTSP 60 GSDCCSALQA VDHNCFCSTL RIAAQIPSKC NLPPLSCGET SEVLREVALV REMDRSDDDL 120 VSSHEDDTDT RLQTSNNLDL NIEQDCRSPK VAHVRSLQSI LSSKDESNSK VVLKVGMEFE 180 SDEFAYRFYS KYAGLVGFSV RKDWVNRSKV HGRVVSRKFT CSKEGHRRKD KRDINVKKHR 240 KETRTGCLAH MIITRQPDGK YRITHFEENH NHENVNPGNA QNLQELPLQQ GTVDGTGVTE 300 ADSSSNLEKQ SKLALQLLGR RFGTVENIDY PAIDFGNYLK SGRARDLKEG EAGRLMYYFQ 360 RQHYENPSFF HAIQLDVDDK ISNIFWADDN MILDYDHFGD VVCLDTAYRT NKDFRPFVQF 420 LGLNHHRQVL IFGAALMYDE TIDSFKWLFR TFIEAMSGKK PKAILTFQDA TIIQAIDSVL 480 PETNHRVCIW QMYQDALEHL SHVTKDADSF AKDLRSCIFY HEDEEDFINA WDAMIDKFTL 540 QQNDWLRWMF REKEKWALVY GKNTFFIDMK SAHLGEDLSN NLREYLNTDV DVLQFFMRFE 600 SMVNEQRFKE LEANYDMGRC TPRLMANVIL LKHASDLYTP KAFEVFQREY EKCLNVVVKL 660 CIGNGSLFEY KANTFGKPSE YTVTYNSSDD TVTCSCMKFE YVGVLCCHAL KVLDHRNIKV 720 LPACYILKRW TRDARVESLG ESFGTSLEEN PKLITASRYR KLCQRILKIS ARAADSDQAF 780 EYAAKRLDEV MQGVEKILTL KPTEETQALT SSSTGAYASE SEHTEIFLDR NAIEGQDDSH 840 TFMQENEREI MGKDPLNNLG EKISKTKRSQ NVHPPPPDTV TSNSISCPPP AYVSSVSSSL 900 THVSQDFYNF GANFQCLYQP PNLSMDQQPS PDIYQPLSLF SNQHDSPSQG QLLQESLIRC 960 PFQESMLQRN QLRQAMDLDV QHPHSTSFIR FD*

Sequence ? help Back to Top

Protein Sequence Length: 993 aa Download sequence Send to blast

MAATKSIVSL CTRAMLAFVL ITLVVQTQVA QLRAQTCSDE LGNLNMCAPF VVPGAGSTSP  60
GSDCCSALQA VDHNCFCSTL RIAAQIPSKC NLPPLSCGET SEVLREVALV REMDRSDDDL  120
VSSHEDDTDT RLQTSNNLDL NIEQDCRSPK VAHVRSLQSI LSSKDESNSK VVLKVGMEFE  180
SDEFAYRFYS KYAGLVGFSV RKDWVNRSKV HGRVVSRKFT CSKEGHRRKD KRDINVKKHR  240
KETRTGCLAH MIITRQPDGK YRITHFEENH NHENVNPGNA QNLQELPLQQ GTVDGTGVTE  300
ADSSSNLEKQ SKLALQLLGR RFGTVENIDY PAIDFGNYLK SGRARDLKEG EAGRLMYYFQ  360
RQHYENPSFF HAIQLDVDDK ISNIFWADDN MILDYDHFGD VVCLDTAYRT NKDFRPFVQF  420
LGLNHHRQVL IFGAALMYDE TIDSFKWLFR TFIEAMSGKK PKAILTFQDA TIIQAIDSVL  480
PETNHRVCIW QMYQDALEHL SHVTKDADSF AKDLRSCIFY HEDEEDFINA WDAMIDKFTL  540
QQNDWLRWMF REKEKWALVY GKNTFFIDMK SAHLGEDLSN NLREYLNTDV DVLQFFMRFE  600
SMVNEQRFKE LEANYDMGRC TPRLMANVIL LKHASDLYTP KAFEVFQREY EKCLNVVVKL  660
CIGNGSLFEY KANTFGKPSE YTVTYNSSDD TVTCSCMKFE YVGVLCCHAL KVLDHRNIKV  720
LPACYILKRW TRDARVESLG ESFGTSLEEN PKLITASRYR KLCQRILKIS ARAADSDQAF  780
EYAAKRLDEV MQGVEKILTL KPTEETQALT SSSTGAYASE SEHTEIFLDR NAIEGQDDSH  840
TFMQENEREI MGKDPLNNLG EKISKTKRSQ NVHPPPPDTV TSNSISCPPP AYVSSVSSSL  900
THVSQDFYNF GANFQCLYQP PNLSMDQQPS PDIYQPLSLF SNQHDSPSQG QLLQESLIRC  960
PFQESMLQRN QLRQAMDLDV QHPHSTSFIR FD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122242.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBL	A0A2R6RQU3	0.0	A0A2R6RQU3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOY23112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1-related sequence 5