PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 491aa    MW: 54521.2 Da    PI: 9.6471
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.72.3e-55353446194
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre +
  Achn248551 353 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLTRYREGD 446
                 59*****************************************************************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF025823.2E-10168327IPR003734Domain of unknown function DUF155
Gene3DG3DSA:1.10.20.105.5E-52348459IPR009072Histone-fold
SuperFamilySSF471132.64E-38356469IPR009072Histone-fold
PfamPF008081.3E-27359423IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-19387405No hitNo description
PROSITE patternPS006850390406IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-19406424No hitNo description
PRINTSPR006151.4E-19425443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEQQTATKRS NSTQKPAASP AIRTSSSNKT LETNMHSWKA LHINMQRSSR TTPLGQILDS  60
GNSLYRSLKA IKPPRPNGII QSRSMKMAAR KATPITLRSQ HEQKAIGADS KQPYIALVDL  120
RSLVEQNKPN FIPPTSRMTN YIVLRFGDVK SEPIGLGANI SGNDCCYMVV FQYGSIVLFN  180
VHEHAVDGYL KIVEKHASGL LPEMRKDEYE VREKPTLNTW MQGGLDYIML QYLNNDGIRT  240
IGSVLGQSIA LDYYVRQVVK FMVLKVYPQH FLQVDGIVAE FTDINRGMEK TGTFTMERKK  300
LFQLVGKANS NLADVILKLG LFERVPAAMA EAPASPAGES HESGGDQSPR SNVREQDRYL  360
PIANISRIMK KALPANGKIA KDAKDTVQEC VSEFISFVTS EASDKCQKEK RKTINGDDLL  420
WAMATLGFED YIDPLKAYLT RYREGDTKGS ARGGDGSSKK DTVGAQLVPN AQYAHQDSFT  480
QGMTYVNYQV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-43352444193NF-YB
4awl_B2e-43352444294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-43352444294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6239661e-161AB623966.1 Camellia sinensis DNA, SSR marker, MSE0306.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.16e-72nuclear factor Y, subunit B10