PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn247731

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 518aa MW: 56705.2 Da PI: 8.2235

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn247731	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.0003	297	314	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ Achn247731 297 RSKHSATEQRRRSKINDR 314 889*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.6E-4	292	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MRYARDRILN HVDLDQVVEW ATTWIGLHRQ IQKGWDWGLA PSDWCLAFWV VGGGYLQTHD 60 FLQPLEGLGK SNAKEESIVE IPTPEKPLLP APPSSGEHIL PGGIGTYSIS HISYFNQRAL 120 KSEGGTFTVA QSSSTDRNEE NSNCSSYTGS GFTVWAESTV KKGKTGKENV AGDRHVSREA 180 GVKTGVGGQW TTSERPSQSS SNNTMTTNHR NATTTFNSLS SSQPPMSQKN QTFMDMLKSA 240 KVTHDEDDDE EEDFVLKKET SPYLRRTKEL LTLTGDLTVK VGGVGGKIND QKPNTPRSKH 300 SATEQRRRSK INDRHVDPNS YSGPWRTASL CYVAESQLKA WLPPPCVKLL IKGPFLRNSH 360 RHADGFVDQS RATNSGSGAP LVFPAKFDEN NVNVSSPTNP RNGQNAVECD MRNITTLKAM 420 DHHPVLSNKA VLLPLSLQPN IFTPSGSGNA IAPIQARVVS DIENATSQPQ YQFLQSRSRT 480 IDCAVDNDIP SSCPAKACSR GSIGDESDQT LKRLKTS*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MRYARDRILN HVDLDQVVEW ATTWIGLHRQ IQKGWDWGLA PSDWCLAFWV VGGGYLQTHD  60
FLQPLEGLGK SNAKEESIVE IPTPEKPLLP APPSSGEHIL PGGIGTYSIS HISYFNQRAL  120
KSEGGTFTVA QSSSTDRNEE NSNCSSYTGS GFTVWAESTV KKGKTGKENV AGDRHVSREA  180
GVKTGVGGQW TTSERPSQSS SNNTMTTNHR NATTTFNSLS SSQPPMSQKN QTFMDMLKSA  240
KVTHDEDDDE EEDFVLKKET SPYLRRTKEL LTLTGDLTVK VGGVGGKIND QKPNTPRSKH  300
SATEQRRRSK INDRHVDPNS YSGPWRTASL CYVAESQLKA WLPPPCVKLL IKGPFLRNSH  360
RHADGFVDQS RATNSGSGAP LVFPAKFDEN NVNVSSPTNP RNGQNAVECD MRNITTLKAM  420
DHHPVLSNKA VLLPLSLQPN IFTPSGSGNA IAPIQARVVS DIENATSQPQ YQFLQSRSRT  480
IDCAVDNDIP SSCPAKACSR GSIGDESDQT LKRLKTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028123432.1	1e-147	transcription factor BIM1-like isoform X1
Refseq	XP_028123433.1	1e-147	transcription factor BIM1-like isoform X1
TrEMBL	A0A2R6QHB8	0.0	A0A2R6QHB8_ACTCH; Transcription factor like
STRING	XP_002514597.1	1e-116	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3969	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	1e-41	bHLH family protein