PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn247731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 518aa MW: 56705.2 Da PI: 8.2235 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.0003 | 297 | 314 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ Achn247731 297 RSKHSATEQRRRSKINDR 314 889*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-4 | 292 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MRYARDRILN HVDLDQVVEW ATTWIGLHRQ IQKGWDWGLA PSDWCLAFWV VGGGYLQTHD 60 FLQPLEGLGK SNAKEESIVE IPTPEKPLLP APPSSGEHIL PGGIGTYSIS HISYFNQRAL 120 KSEGGTFTVA QSSSTDRNEE NSNCSSYTGS GFTVWAESTV KKGKTGKENV AGDRHVSREA 180 GVKTGVGGQW TTSERPSQSS SNNTMTTNHR NATTTFNSLS SSQPPMSQKN QTFMDMLKSA 240 KVTHDEDDDE EEDFVLKKET SPYLRRTKEL LTLTGDLTVK VGGVGGKIND QKPNTPRSKH 300 SATEQRRRSK INDRHVDPNS YSGPWRTASL CYVAESQLKA WLPPPCVKLL IKGPFLRNSH 360 RHADGFVDQS RATNSGSGAP LVFPAKFDEN NVNVSSPTNP RNGQNAVECD MRNITTLKAM 420 DHHPVLSNKA VLLPLSLQPN IFTPSGSGNA IAPIQARVVS DIENATSQPQ YQFLQSRSRT 480 IDCAVDNDIP SSCPAKACSR GSIGDESDQT LKRLKTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028123432.1 | 1e-147 | transcription factor BIM1-like isoform X1 | ||||
Refseq | XP_028123433.1 | 1e-147 | transcription factor BIM1-like isoform X1 | ||||
TrEMBL | A0A2R6QHB8 | 0.0 | A0A2R6QHB8_ACTCH; Transcription factor like | ||||
STRING | XP_002514597.1 | 1e-116 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3969 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.5 | 1e-41 | bHLH family protein |